Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XcfCFBP4885P_RS18835 Genome accession   NZ_CP020992
Coordinates   4427735..4429255 (+) Length   506 a.a.
NCBI ID   WP_022560201.1    Uniprot ID   A0AB34Q8M6
Organism   Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4416940..4428342 4427735..4429255 flank -607


Gene organization within MGE regions


Location: 4416940..4429255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcfCFBP4885P_RS18795 (XcfCFBP4885P_00775) speA 4418069..4419955 (-) 1887 WP_007974550.1 arginine decarboxylase -
  XcfCFBP4885P_RS18800 (XcfCFBP4885P_00770) speE 4420188..4421045 (+) 858 WP_022560196.1 polyamine aminopropyltransferase -
  XcfCFBP4885P_RS18805 (XcfCFBP4885P_00765) - 4421413..4422024 (-) 612 WP_007963431.1 PH domain-containing protein -
  XcfCFBP4885P_RS18810 (XcfCFBP4885P_00760) - 4422217..4423029 (-) 813 Protein_3685 outer membrane beta-barrel protein -
  XcfCFBP4885P_RS18815 (XcfCFBP4885P_00755) - 4423585..4424241 (+) 657 WP_022560198.1 RIO1 family regulatory kinase/ATPase -
  XcfCFBP4885P_RS18820 (XcfCFBP4885P_00750) - 4424444..4426429 (-) 1986 WP_022560199.1 beta-N-acetylglucosaminidase domain-containing protein -
  XcfCFBP4885P_RS18825 (XcfCFBP4885P_00740) - 4426912..4427286 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  XcfCFBP4885P_RS18830 (XcfCFBP4885P_00735) - 4427441..4427719 (+) 279 WP_022560200.1 accessory factor UbiK family protein -
  XcfCFBP4885P_RS18835 (XcfCFBP4885P_00730) comM 4427735..4429255 (+) 1521 WP_022560201.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53966.63 Da        Isoelectric Point: 8.1542

>NTDB_id=227718 XcfCFBP4885P_RS18835 WP_022560201.1 4427735..4429255(+) (comM) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPYTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAISSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRIPPQALRSGN
PGEDSASVRARVVAARQRQLARGELPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=227718 XcfCFBP4885P_RS18835 WP_022560201.1 4427735..4429255(+) (comM) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTATACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGCGCTGCCCTTC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTATGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAGCCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCTGGTTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCAGCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCACGCATCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CCCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGAGCTGCCCAA
CGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

54.795

100

0.553
  comM Glaesserella parasuis strain SC1401

53.649

100

0.538
  comM Vibrio campbellii strain DS40M4

53.557

100

0.536
  comM Legionella pneumophila str. Paris

50.905

98.221

0.5
  comM Legionella pneumophila strain ERS1305867

50.905

98.221

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.457

Multiple sequence alignment