Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VP_RS13290 | Genome accession | NC_004603 |
| Coordinates | 2864817..2865347 (-) | Length | 176 a.a. |
| NCBI ID | WP_005466625.1 | Uniprot ID | Q87LA3 |
| Organism | Vibrio parahaemolyticus RIMD 2210633 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2859817..2870347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VP_RS13270 (VP2705) | - | 2860141..2860470 (-) | 330 | WP_005481006.1 | MSHA biogenesis protein MshK | - |
| VP_RS13275 (VP2706) | gspM | 2860463..2861113 (-) | 651 | WP_005456325.1 | type II secretion system protein GspM | - |
| VP_RS13280 (VP2707) | - | 2861110..2862555 (-) | 1446 | WP_005481017.1 | MSHA biogenesis protein MshI | - |
| VP_RS13285 (VP2708) | csrD | 2862567..2864576 (-) | 2010 | WP_011106082.1 | RNase E specificity factor CsrD | - |
| VP_RS13290 (VP2709) | ssb | 2864817..2865347 (-) | 531 | WP_005466625.1 | single-stranded DNA-binding protein | Machinery gene |
| VP_RS13295 (VP2710) | qstR | 2865626..2866270 (+) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VP_RS13300 (VP2711) | galU | 2866528..2867400 (+) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19563.62 Da Isoelectric Point: 4.9269
>NTDB_id=22759 VP_RS13290 WP_005466625.1 2864817..2865347(-) (ssb) [Vibrio parahaemolyticus RIMD 2210633]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=22759 VP_RS13290 WP_005466625.1 2864817..2865347(-) (ssb) [Vibrio parahaemolyticus RIMD 2210633]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAACAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAACAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.824 |
| ssb | Glaesserella parasuis strain SC1401 |
57.143 |
100 |
0.614 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.483 |