Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MMJJ_RS01245 Genome accession   NZ_CP026606
Coordinates   240688..242628 (+) Length   646 a.a.
NCBI ID   WP_104837330.1    Uniprot ID   -
Organism   Methanococcus maripaludis strain DSM 2067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 235688..247628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMJJ_RS01230 (MMJJ_02460) - 235699..236118 (+) 420 WP_104837327.1 EamA family transporter -
  MMJJ_RS01235 (MMJJ_02470) uvrA 236245..239100 (+) 2856 WP_104837328.1 excinuclease ABC subunit UvrA Machinery gene
  MMJJ_RS01240 (MMJJ_02480) uvrC 239108..240691 (+) 1584 WP_104837329.1 excinuclease ABC subunit UvrC Machinery gene
  MMJJ_RS01245 (MMJJ_02490) uvrB 240688..242628 (+) 1941 WP_104837330.1 excinuclease ABC subunit UvrB Machinery gene
  MMJJ_RS01250 (MMJJ_02500) - 242665..242898 (-) 234 WP_104837331.1 hypothetical protein -
  MMJJ_RS01255 (MMJJ_02510) - 243249..243806 (+) 558 WP_104837332.1 YqhA family protein -
  MMJJ_RS01260 (MMJJ_02520) - 243815..244249 (-) 435 WP_244901541.1 hypothetical protein -
  MMJJ_RS01265 (MMJJ_02530) - 244388..244732 (-) 345 WP_104837333.1 cupin domain-containing protein -
  MMJJ_RS01270 (MMJJ_02540) - 244750..245292 (-) 543 WP_244901542.1 4Fe-4S binding protein -
  MMJJ_RS01275 (MMJJ_02550) - 245423..246121 (-) 699 WP_104837335.1 ATP-binding protein -

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 74985.36 Da        Isoelectric Point: 5.9980

>NTDB_id=227517 MMJJ_RS01245 WP_104837330.1 240688..242628(+) (uvrB) [Methanococcus maripaludis strain DSM 2067]
MSSPDFKLKADFKPKGSQPEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEF
KEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEM
GFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDLKNMSKKHEI
DSFYMYPAKHFVIPEEDKKNAIKSILKELDEWLVNLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPA
YCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELD
NSNQVVEQIIRPTGLLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI
ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARNANSKVVLYADKMTDSIKK
AVFETERRRKLQKEYNEKHNIMPKTIVKPIREKVVDISDVKHIPVADIPNVIIELETEMYEAAEALEFEKAIKIRDTIAK
LKKKIK

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=227517 MMJJ_RS01245 WP_104837330.1 240688..242628(+) (uvrB) [Methanococcus maripaludis strain DSM 2067]
ATGAGTTCTCCCGATTTCAAGTTAAAAGCAGATTTTAAACCAAAAGGATCCCAGCCAGAAGCAATTGCAGGGCTGGTTAA
AGACCTTGAAAAAAATCCAGAAAAAAGTAAGCAGACACTGCTTGGTGTTACAGGTTCTGGAAAAACTTTTACTATTGCAA
ATGTTATTGAAAAAGTTCAAAAACCAACACTGGTAATTGCGCACAATAAAACACTTGCGGCACAACTTTATAATGAGTTT
AAAGAATTCTTTCCTGAAAATCGAGTAGAATATTTTGTTTCGTACTATGATTACTATCAGCCAGAATCATATATTCCACA
AAAAGATCAATATATTGAAAAGGATGCACAGATCAACCCGAAAATTGAGCAGATGCGTCTTCGTGCAACTTCTGCAATTC
TTTCGAGAAGGGACGTGATAATTGTTGCATCGGTTTCCTGCATATATGGTCTTGGAAATCCTGAACTTTTTAAAGAAATG
GGTTTTGAACTTAAAGTTGGAGAAAAAATCAAAAGATCCGACATTATTGAAAAATTAGTAGATATTCAATACGAAAGAAA
CGATATGGAATTAGTTCCAGGAAGATTCAGGGTAAAAGGCGATACTTTAGATATTATTCCCGGATATCAAGATGATATTT
TAAGAGTTGAAATGTTTGGGGATGAAATTGACAGAATTTATGAATTGGATCTAAAAAACATGTCTAAAAAACATGAAATA
GATTCATTTTACATGTATCCTGCAAAACACTTCGTAATTCCCGAAGAAGATAAGAAAAATGCGATTAAATCTATTTTAAA
AGAACTCGATGAATGGCTTGTAAATTTAGACATGCTAAAATCCCACAGGTTAAAGCAGAAAACCCTGTATGATATAGAAA
TGATTGAAGAAACTGGAAGCTGTAAGGGAATTGAAAATTATTCGAGGCATTTTGAAAATAGGAAAGAAGGAGAACCTGCA
TACTGCCTTTTAGACTATTTCCCTGAAGATTTTTTGATTGTAATTGATGAAAGCCACCAGACAATCCCGCAAATTCGCGG
AATGTATAAAGGAGACCGTTCAAGAAAACAGTCATTGATTGATTACGGTTTCAGACTTCCAAGTGCATATGACAACCGCC
CACTTAAATTTGAAGAATTTAAAAAATACATGAATAATGTAATTTTTGTGTCAGCTACCCCTGGAGAATACGAATTAGAT
AATTCAAATCAGGTTGTAGAACAGATTATTAGACCAACAGGATTGCTTGATCCAGAAGTTGAAATAAGGCCGATTGAAAA
TCAGGTTGAAGATATCATAAAAGAAACTGAAAAAATGGTCGAAAAAGGGGAACGGGTATTAATTACGACCCTTACAAAAC
GTCTTGCAGAGGAATTAACAGAATATCTTGCAAAACGAAATGTTAAAGCAAGATATCTGCATTCTGACATAGATACAATT
GAAAGGACTGAAATTATTCGAAATTTAAGGCTTGGAAAATTTGACTGCCTCGTTGGAATAAATTTATTGAGGGAAGGGTT
AGACATTCCAGAAGTCGGGTTCGTTGGAATACTCGATGCTGACAAGGAAGGGTTTTTGAGAAACGATAAAAGCTTGATTC
AAACAATTGGTCGTGCTGCAAGAAATGCAAACTCAAAAGTTGTACTTTATGCTGACAAAATGACCGACTCAATTAAAAAA
GCAGTTTTCGAAACAGAACGAAGAAGAAAACTTCAAAAAGAATACAATGAAAAACACAATATCATGCCTAAAACTATTGT
AAAACCAATAAGAGAAAAAGTAGTCGATATTTCTGATGTAAAACATATCCCTGTAGCAGATATTCCAAACGTCATTATTG
AACTTGAAACTGAGATGTATGAAGCCGCAGAAGCGCTCGAATTTGAAAAAGCAATAAAAATAAGAGATACAATTGCAAAA
CTGAAGAAAAAAATTAAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(12-122)

UvrB/uvrC motif (UVR)

(610-644)

Ultra-violet resistance protein B (UvrB)

(549-591)

UvrB interaction domain (UvrB_inter)

(163-251)

Helicase conserved C-terminal domain (Helicase_C)

(431-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.521

100

0.56
  uvrB Streptococcus pneumoniae R6

55.368

100

0.559
  uvrB Streptococcus pneumoniae D39

55.368

100

0.559

Multiple sequence alignment