Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   MMJJ_RS01240 Genome accession   NZ_CP026606
Coordinates   239108..240691 (+) Length   527 a.a.
NCBI ID   WP_104837329.1    Uniprot ID   -
Organism   Methanococcus maripaludis strain DSM 2067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 234108..245691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMJJ_RS01220 (MMJJ_02440) xseA 234241..235464 (+) 1224 WP_104837326.1 exodeoxyribonuclease VII large subunit -
  MMJJ_RS01225 (MMJJ_02450) - 235486..235689 (+) 204 WP_011170675.1 exodeoxyribonuclease VII small subunit -
  MMJJ_RS01230 (MMJJ_02460) - 235699..236118 (+) 420 WP_104837327.1 EamA family transporter -
  MMJJ_RS01235 (MMJJ_02470) uvrA 236245..239100 (+) 2856 WP_104837328.1 excinuclease ABC subunit UvrA Machinery gene
  MMJJ_RS01240 (MMJJ_02480) uvrC 239108..240691 (+) 1584 WP_104837329.1 excinuclease ABC subunit UvrC Machinery gene
  MMJJ_RS01245 (MMJJ_02490) uvrB 240688..242628 (+) 1941 WP_104837330.1 excinuclease ABC subunit UvrB Machinery gene
  MMJJ_RS01250 (MMJJ_02500) - 242665..242898 (-) 234 WP_104837331.1 hypothetical protein -
  MMJJ_RS01255 (MMJJ_02510) - 243249..243806 (+) 558 WP_104837332.1 YqhA family protein -
  MMJJ_RS01260 (MMJJ_02520) - 243815..244249 (-) 435 WP_244901541.1 hypothetical protein -
  MMJJ_RS01265 (MMJJ_02530) - 244388..244732 (-) 345 WP_104837333.1 cupin domain-containing protein -
  MMJJ_RS01270 (MMJJ_02540) - 244750..245292 (-) 543 WP_244901542.1 4Fe-4S binding protein -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 61417.09 Da        Isoelectric Point: 9.7310

>NTDB_id=227516 MMJJ_RS01240 WP_104837329.1 239108..240691(+) (uvrC) [Methanococcus maripaludis strain DSM 2067]
MINISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIVTDNEVEALILENTLIKK
YSPKYNIDLKDSKNYAYIYISEENFPRIGISRNKSKKGKFYGPFTSAKERDYVLDVLKKTFKIRSCKNMHKRPCLRHHIK
NCTAPCSGDITSKDYLNQIKKAEHVLKGHIDSLIDELKIEMDNKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKYNE
DVISVLEKSGKLHIMVFNVLKGTLFDRKYFEFDYTENFFEEFLIQYYSENEVPSEIILSELPKNLEEDNNEYNSDAILEY
LSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEIYVNGNEIKVQSLKNKLMLDKSPNVIECFDISHLSGTFTVGSMVQFRNG
KPDKKNYRRFKIKTVSGIDDFKSISEVVFRRYSKLIEENLELPDLIIIDGGKGQLSSAFSELRKLKLKIPLISIAKREEE
IYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAINYNRLLKKKELIK

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=227516 MMJJ_RS01240 WP_104837329.1 239108..240691(+) (uvrC) [Methanococcus maripaludis strain DSM 2067]
ATGATAAATATTTCAGATATTCCGAAAAATCCGGGCTGCTATATTTATAAAAACGAATCCGGAACTGTAATTTATGTTGG
GAAAGCAAAAAACTTGAAAAAAAGAGTTAGTAGCTACTTTAACAAAAAAAATCACGATCCTAAAACCGAAAAACTTGTAA
AATCAATTTACGAGATGGAATTCATAGTAACAGATAATGAAGTCGAAGCTTTGATTTTAGAAAATACTTTAATCAAAAAA
TACAGTCCTAAATACAATATAGACTTAAAAGACTCTAAAAATTATGCATATATCTACATTAGCGAAGAAAATTTCCCAAG
AATTGGAATATCGAGAAATAAATCAAAAAAAGGAAAATTTTATGGACCATTTACTTCTGCAAAGGAAAGAGATTATGTTT
TGGATGTTTTAAAAAAGACTTTCAAAATAAGATCTTGTAAAAATATGCACAAACGTCCCTGTTTAAGGCACCATATAAAA
AACTGCACCGCGCCATGTAGTGGTGACATAACCTCCAAAGATTATTTGAATCAGATAAAAAAGGCAGAACATGTTTTAAA
AGGACATATCGATTCATTAATTGATGAACTCAAAATTGAAATGGATAATAAATCAAAAAATCTGCAGTTTGAAGAAGCTT
TATTGATTAGGGAAGAAATAAATGCAATTGAAAGACTTAAGACTCGTCAAAACGTTAAAAGAGATGTAAAATATAATGAA
GATGTAATCAGCGTCCTTGAAAAAAGCGGAAAACTCCATATAATGGTTTTTAATGTATTGAAAGGAACGCTTTTTGATAG
AAAATACTTTGAATTTGATTACACAGAAAATTTCTTTGAAGAGTTTTTAATCCAGTATTATTCAGAAAATGAAGTTCCTT
CAGAAATTATACTTTCAGAGCTGCCTAAAAATCTTGAAGAAGATAATAATGAATACAATTCTGATGCAATTTTAGAGTAT
CTGTCAAAAAAGAAAGGTTCAAAAGTTGCTTTTAAAATCCCTAAACAAGGAGAGAAAAAACAACTTTTAGACCTTGCTAT
AAAAAATCTTGAAATTTATGTTAATGGAAATGAAATAAAAGTTCAAAGTTTAAAAAACAAATTAATGCTTGATAAAAGTC
CAAATGTAATAGAATGCTTTGATATATCGCATCTTTCAGGAACATTTACTGTTGGATCAATGGTCCAGTTTAGAAATGGA
AAACCTGACAAAAAAAATTACCGCAGATTTAAAATAAAAACAGTTTCTGGAATAGATGACTTCAAATCCATTTCTGAGGT
AGTATTTAGAAGATACAGTAAATTAATCGAAGAAAATTTGGAATTGCCTGATTTAATAATTATTGATGGTGGAAAGGGCC
AGCTTTCGTCAGCATTTTCTGAACTTCGAAAATTAAAACTTAAAATTCCGCTAATTTCGATCGCAAAACGTGAAGAAGAA
ATTTACACTCCCGGAATTGAAAATCCCCTTCCAATAAAGAAAAATGAAAAAGCATCCCTATTTATTCAGGAAATTCGTGA
TGAAGCACACAGATTCGCAATAAATTACAATCGATTACTTAAAAAAAAGGAATTGATAAAATGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(192-225)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(366-514)

GIY-YIG catalytic domain (GIY-YIG)

(11-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

38.49

100

0.397
  uvrC Streptococcus pneumoniae D39

38.49

100

0.397
  uvrC Streptococcus pneumoniae TIGR4

38.49

100

0.397