Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   MMJJ_RS01235 Genome accession   NZ_CP026606
Coordinates   236245..239100 (+) Length   951 a.a.
NCBI ID   WP_104837328.1    Uniprot ID   -
Organism   Methanococcus maripaludis strain DSM 2067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231245..244100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMJJ_RS01205 (MMJJ_02410) - 231336..232256 (-) 921 WP_104837323.1 DNA adenine methylase -
  MMJJ_RS01210 (MMJJ_02420) - 232331..232648 (-) 318 WP_104837324.1 hypothetical protein -
  MMJJ_RS01215 (MMJJ_02430) - 232784..234142 (+) 1359 WP_104837325.1 MATE family efflux transporter -
  MMJJ_RS01220 (MMJJ_02440) xseA 234241..235464 (+) 1224 WP_104837326.1 exodeoxyribonuclease VII large subunit -
  MMJJ_RS01225 (MMJJ_02450) - 235486..235689 (+) 204 WP_011170675.1 exodeoxyribonuclease VII small subunit -
  MMJJ_RS01230 (MMJJ_02460) - 235699..236118 (+) 420 WP_104837327.1 EamA family transporter -
  MMJJ_RS01235 (MMJJ_02470) uvrA 236245..239100 (+) 2856 WP_104837328.1 excinuclease ABC subunit UvrA Machinery gene
  MMJJ_RS01240 (MMJJ_02480) uvrC 239108..240691 (+) 1584 WP_104837329.1 excinuclease ABC subunit UvrC Machinery gene
  MMJJ_RS01245 (MMJJ_02490) uvrB 240688..242628 (+) 1941 WP_104837330.1 excinuclease ABC subunit UvrB Machinery gene
  MMJJ_RS01250 (MMJJ_02500) - 242665..242898 (-) 234 WP_104837331.1 hypothetical protein -
  MMJJ_RS01255 (MMJJ_02510) - 243249..243806 (+) 558 WP_104837332.1 YqhA family protein -

Sequence

Protein


Download         Length: 951 a.a.        Molecular weight: 106372.58 Da        Isoelectric Point: 7.3003

>NTDB_id=227515 MMJJ_RS01235 WP_104837328.1 236245..239100(+) (uvrA) [Methanococcus maripaludis strain DSM 2067]
MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFLGLMNKPDVDSIEGLS
PAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEHNIRIESQSPEKIAEKIEEEFSETVTILSPIVRQKKGT
YQKLFKDLNSEGFARIRVNGEIYRTDDEITLERYKKHDIEIVIDRLTPKDDHSRLVEACERALERSGGLLIVTGTKNNEE
FEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHL
AAVANHFGFTVLTPIKDLSKEQLDILMYGSPEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFM
KVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLS
RRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMG
PGAGVHGGDVVAVGTPTEISKNKDSLTGKYLSGELKIEIPKNRRKSDKFLKLSNCRQNNLKNVSVEIPTGVFNVITGVSG
SGKSTLIYENLYPALKEKIKSEESVEELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIR
QVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMS
VEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLI
DVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGKIIATGTPEEIAKCKLSHTGKFLKNILSKN

Nucleotide


Download         Length: 2856 bp        

>NTDB_id=227515 MMJJ_RS01235 WP_104837328.1 236245..239100(+) (uvrA) [Methanococcus maripaludis strain DSM 2067]
ATGAAAGATATCATCATAAAAGGCGCAAGAGAACATAATTTAAAAAATATCTCGCTAACACTTCCAAGAAATAATTTAAT
AGTTGTAACTGGAGTTTCCGGCTCTGGAAAGTCCACAATAGCATTTGATACGATATATGCCGAAGGTCAGAGAAGGTATG
TTGAATCACTTTCAGCATATGCAAGACAGTTTTTAGGGCTTATGAATAAACCTGATGTTGATAGTATTGAAGGATTATCC
CCTGCAATTGCAATACAGCAGAAAACAACAAGTAAAAACCCAAGAAGTACCGTTGGAACGGTTACTGAAATTTATGACTA
CTTAAGACTGCTTTACGCAAGAATTGGAATTCCATACTGTCCCGAACACAATATTAGAATAGAATCACAGAGTCCTGAAA
AAATAGCTGAAAAAATCGAAGAAGAATTTTCTGAAACTGTGACGATATTGTCCCCCATTGTGAGGCAGAAAAAGGGAACC
TACCAAAAACTCTTTAAAGACTTAAATTCCGAAGGTTTCGCAAGAATTCGTGTAAATGGCGAAATTTACAGAACTGATGA
CGAAATAACACTTGAAAGGTACAAAAAACATGATATTGAAATTGTTATCGATAGATTAACTCCAAAAGATGACCATTCAA
GGCTTGTTGAAGCCTGTGAAAGAGCACTTGAACGTTCAGGCGGACTTTTAATTGTAACTGGCACTAAAAATAATGAAGAA
TTTGAAAAAATTTATTCTTCAAATTTAGCCTGCCCAATATGTGGTATTTCGTTTGAAGAGCTTCAGCCAAGAATGTTTTC
ATTTAACAGCCCATTTGGTGCATGTGAATACTGTAGCGGACTTGGAATAAAAATGGAGTTTGATGCGGACTTGATAATTC
CAGATAAAAACAAATGCATTGCTGACGGTGCAGTTGCACTTTATAGAAACTTCCTTGATGGATACAGGTCACAACATCTG
GCGGCAGTTGCAAATCATTTTGGATTTACGGTTTTAACACCGATAAAAGACCTTTCAAAAGAACAGTTAGACATTTTGAT
GTATGGAAGTCCTGAAAAAATTCATTTTAAAGTATCAAATGGCAGTGGAGATACCGAATGGAGCCAGAATAAACCATGGG
AAGGGCTTATCCCGCAATCCATTAGACTCTACAATGAAACTAAATCAGAATACAGAAGAAAAGAACTTGAAAAGTTCATG
AAAGTCAGTTTGTGTCCAAAATGTGGTGGAAAACGTTTAAAAGATAAAGCACTTGCCGTAAAAATAGAAGATAAGTCTAT
TATCGATTTAACGGATCTTTCAATTTCAAAAGCAGAAGAATTCTTTAATAATTTAAAATTAACGGATAAAGAGTACGAAA
TTGCAAAACAAGTTATAAAAGAAATAAAATCGAGATTAAAATTCTTAAATGACGTTGGTTTGGGATATTTAACCCTTTCA
AGGCGTTCTGGAACACTTTCAGGTGGAGAAGCTCAGAGAATAAGACTTGCAACCCAGATTGGTTCAAACTTAACTGGTGT
TTTATATGTACTCGATGAACCATCAATTGGCCTTCACCAAAGAGACAACCAAAAATTAATTGAAACGCTCCATAAATTAA
GAAATTTAGATAATACATTGGTTGTTGTTGAACATGACGAAGATACAATTTTAAATGCAGATTATGTCGTAGATATGGGG
CCAGGTGCAGGAGTTCATGGTGGAGATGTTGTTGCAGTTGGAACGCCAACAGAAATTTCAAAAAATAAGGATTCGTTAAC
TGGAAAATACCTATCTGGCGAATTAAAAATCGAAATACCAAAAAATAGAAGAAAAAGCGATAAATTTTTAAAACTTTCAA
ACTGCAGGCAGAACAATTTAAAAAATGTGTCTGTTGAAATTCCAACAGGAGTATTTAACGTGATTACAGGAGTTTCGGGA
AGTGGAAAATCCACTTTAATTTATGAAAACCTGTATCCTGCATTGAAAGAAAAAATAAAATCTGAAGAGAGTGTTGAGGA
ACTTGATTTTGAGGATCAGCTCTACGAAAATACTAAAGAAAAATGCAATCTTGAAATCAATTCAGAAATCGATAAAGTTG
TCGTAATTGACCAGAGCCCGATTGGAAGAACCCCTCGATCAAACCCTGCAACTTACACGAAAGTATTTGATAAAATCAGG
CAGGTTTTTGCAGAAACCAAAGAAGCAAAAATAAAAGGGTATGGTCCAGGAAGGTTCTCTTTTAACGTGAAAGGAGGACG
CTGTGAAAACTGTCAGGGCGATGGAGTTATAAAAATAGAAATGAACTTTTTGCCAGATGTTTTTGTGGAATGTGAAGAGT
GTAAGGGTGCTAGATACAACCACGAAACTCTTGAAGTAAAATATAAAGGAAAATCAATTTCCGATGTTTTAAACATGAGT
GTTGAGGAGGCAAGAGAACATTTTAAAAATATTCCGCAGATTTCAAATAAATTAAAAACTCTGTGCGATGTTGGGCTTGG
ATACATTAAATTAGGACAGAGTTCCACAACACTTTCAGGTGGAGAAGCTCAAAGAATTAAATTAACAAGGGAATTATCCA
AAAGAGCTACGGGAAACACCATATATTTACTCGATGAACCGACAACAGGACTTCACTTCCACGATGTTAAAAAATTAATC
GATGTTTTAAACAGCCTCGTTGAAAAAGGAAACACTGTAGTTGTAATCGAACATAACCTCGATGTAATAAAATGTGCTGA
CCACATAATCGACCTTGGACCTGAAGGCGGGGAATTTGGCGGTAAAATCATTGCAACAGGGACTCCCGAAGAAATTGCAA
AATGTAAATTAAGCCATACTGGAAAATTCTTAAAAAACATTCTTTCCAAAAATTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-233)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-398)

ABC transporter (ABC_tran)

(620-868)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

54.393

100

0.547
  uvrA Streptococcus pneumoniae TIGR4

54.393

100

0.547
  uvrA Streptococcus pneumoniae D39

54.393

100

0.547