Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B0B39_RS14630 Genome accession   NZ_CP020894
Coordinates   3307242..3308750 (+) Length   502 a.a.
NCBI ID   WP_085662640.1    Uniprot ID   -
Organism   Legionella longbeachae strain F1157CHC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3302242..3313750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0B39_RS14605 (B0B39_07865) - 3304364..3305185 (-) 822 WP_003635248.1 aminotransferase class IV -
  B0B39_RS14610 (B0B39_07870) - 3305240..3305434 (-) 195 WP_003635246.1 PA3496 family putative envelope integrity protein -
  B0B39_RS14615 (B0B39_07875) - 3305700..3306278 (+) 579 WP_085662636.1 5-formyltetrahydrofolate cyclo-ligase -
  B0B39_RS14620 (B0B39_07880) - 3306313..3306654 (-) 342 WP_003635241.1 P-II family nitrogen regulator -
  B0B39_RS14625 (B0B39_07885) - 3306761..3307018 (+) 258 WP_085662638.1 accessory factor UbiK family protein -
  B0B39_RS14630 (B0B39_07890) comM 3307242..3308750 (+) 1509 WP_085662640.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B0B39_RS14635 (B0B39_07895) - 3308805..3310118 (-) 1314 WP_003635235.1 glycosyltransferase family 87 protein -
  B0B39_RS14640 (B0B39_07900) - 3310168..3311058 (-) 891 WP_003635233.1 aspartate carbamoyltransferase catalytic subunit -
  B0B39_RS14645 (B0B39_07905) ruvX 3311165..3311584 (-) 420 WP_003635231.1 Holliday junction resolvase RuvX -
  B0B39_RS14650 (B0B39_07910) - 3311577..3312140 (-) 564 WP_003635227.1 YqgE/AlgH family protein -
  B0B39_RS14655 (B0B39_07915) - 3312359..3313030 (+) 672 WP_003635225.1 TIGR00153 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55215.76 Da        Isoelectric Point: 8.2054

>NTDB_id=226984 B0B39_RS14630 WP_085662640.1 3307242..3308750(+) (comM) [Legionella longbeachae strain F1157CHC]
MNLAFTKARSTIGMLAHPVSVEVHLSNGLPGFTIVGLAETAVKESKDRVRSAIVNSQFEFPCRKITVNLGPADLPKTGSG
FDLPIALGILAASHQIPQDKLSHHEFIAELALNGELRGISSIIPAILAVHKDKNLLIIAKANAYEASLTGYQNIYSANNL
REICSYLCQNTPLSSLPPKPEACTTQYGFDWSDIKGQLHAKKAMEIAACGGHNILLSGAPGSGKTMLAKRFITLLPQLSE
TEALECVAVNSLRGKLPDFREWRSPPFRAPHHTASTVSLVGGGNPPKPGEISLAHQGVLFLDELPEFKRQVLETLRQPLE
SGSICISRAAVQMEFPAKFQLIAAMNPCPCGQLGNPYANCLCTSDRIKSYHAKISAPLMDRIDMHICVQALSQEELVAPN
DSPHQQSELIREKVIKIRSRQLERQNCLNAFLSARECEEVCRTGIEEQHFLTQFMTRMQLSARGYHRLLKVARTIADIDN
SPNVCLHHLQQAVSFKHNLHIK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=226984 B0B39_RS14630 WP_085662640.1 3307242..3308750(+) (comM) [Legionella longbeachae strain F1157CHC]
ATGAATCTTGCATTTACCAAAGCACGTAGCACCATAGGGATGTTAGCACATCCCGTCTCCGTAGAAGTCCATTTATCAAA
TGGTTTGCCCGGATTTACCATAGTAGGCCTCGCCGAAACTGCTGTAAAAGAAAGTAAGGATAGAGTCCGCTCTGCTATCG
TCAATAGCCAATTCGAATTCCCTTGTCGTAAAATTACAGTAAATCTTGGTCCTGCTGATTTACCTAAAACAGGAAGCGGC
TTCGATTTACCGATAGCTCTTGGTATTCTTGCTGCCTCTCACCAAATTCCCCAAGATAAATTAAGCCATCATGAGTTCAT
TGCTGAACTCGCTTTAAATGGAGAACTTAGGGGTATTTCTTCCATTATTCCTGCGATCCTTGCGGTGCATAAAGACAAAA
ATTTACTCATTATTGCTAAAGCCAATGCCTATGAGGCTTCTTTAACTGGATATCAAAATATTTATAGCGCAAATAATTTG
CGCGAAATCTGCAGCTATCTTTGTCAAAACACCCCTTTGTCATCCCTCCCCCCAAAACCAGAAGCCTGCACTACACAGTA
TGGATTCGATTGGTCTGACATCAAGGGACAGTTGCATGCAAAAAAAGCGATGGAAATCGCTGCTTGTGGAGGACACAATA
TTCTGCTTAGTGGTGCTCCTGGAAGTGGCAAGACCATGTTAGCAAAAAGGTTTATTACTTTATTGCCCCAATTATCTGAA
ACAGAAGCGCTCGAGTGTGTAGCTGTCAATTCCCTGCGTGGTAAGTTACCTGATTTTCGTGAATGGCGTTCCCCTCCTTT
TCGTGCCCCTCATCATACAGCGTCAACAGTATCCTTAGTTGGTGGCGGAAACCCACCTAAACCAGGAGAAATTTCTTTAG
CACATCAAGGAGTCTTATTTCTGGATGAATTACCTGAATTCAAACGCCAAGTTTTAGAAACCTTGAGGCAACCCCTGGAG
TCGGGTTCAATATGTATTTCTCGGGCTGCAGTTCAGATGGAATTTCCAGCTAAATTTCAGCTTATTGCAGCAATGAATCC
TTGCCCATGTGGTCAATTAGGCAATCCATATGCGAACTGCCTATGTACCTCTGATCGCATTAAAAGTTATCATGCCAAGA
TATCAGCACCCCTGATGGATAGAATTGACATGCATATTTGTGTACAAGCACTATCCCAGGAAGAATTAGTTGCTCCCAAT
GATAGTCCTCATCAACAAAGTGAATTAATTAGAGAGAAAGTAATCAAAATAAGATCAAGACAATTGGAGCGGCAAAATTG
CCTTAATGCCTTTTTAAGTGCAAGAGAGTGTGAGGAAGTTTGTAGGACAGGAATCGAGGAACAGCATTTTTTAACTCAAT
TTATGACGCGAATGCAACTGTCTGCACGAGGATATCATCGTCTACTTAAAGTAGCACGAACGATAGCAGATATAGATAAC
AGCCCTAATGTATGCCTCCATCACTTACAACAAGCCGTATCGTTTAAGCATAATCTACATATTAAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

74.85

99.801

0.747
  comM Legionella pneumophila str. Paris

74.85

99.801

0.747
  comM Haemophilus influenzae Rd KW20

49.8

99.602

0.496
  comM Vibrio campbellii strain DS40M4

48.692

99.004

0.482
  comM Vibrio cholerae strain A1552

48.79

98.805

0.482
  comM Glaesserella parasuis strain SC1401

46.894

99.402

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.685

99.402

0.424

Multiple sequence alignment