Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   B0B39_RS04410 Genome accession   NZ_CP020894
Coordinates   994821..996926 (+) Length   701 a.a.
NCBI ID   WP_012978911.1    Uniprot ID   -
Organism   Legionella longbeachae strain F1157CHC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 989821..1001926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0B39_RS04385 (B0B39_15750) - 990414..991844 (-) 1431 WP_085662863.1 M protein -
  B0B39_RS04390 (B0B39_15755) pilM 992081..993145 (+) 1065 WP_003632474.1 type IV pilus assembly protein PilM Machinery gene
  B0B39_RS04395 (B0B39_15760) pilN 993150..993713 (+) 564 WP_003632473.1 PilN domain-containing protein Machinery gene
  B0B39_RS04400 (B0B39_15765) pilO 993710..994309 (+) 600 WP_012978910.1 type 4a pilus biogenesis protein PilO Machinery gene
  B0B39_RS04405 (B0B39_15770) pilP 994306..994812 (+) 507 WP_003632471.1 pilus assembly protein PilP Machinery gene
  B0B39_RS04410 (B0B39_15775) pilQ 994821..996926 (+) 2106 WP_012978911.1 type IV pilus secretin PilQ Machinery gene
  B0B39_RS04415 (B0B39_15780) aroK 997262..997789 (+) 528 WP_003632469.1 shikimate kinase AroK -
  B0B39_RS04420 (B0B39_15785) aroB 997776..998879 (+) 1104 WP_003632468.1 3-dehydroquinate synthase -
  B0B39_RS04425 (B0B39_15790) - 998882..1000315 (+) 1434 WP_012978912.1 SPOR domain-containing protein -
  B0B39_RS04430 (B0B39_15795) - 1001132..1001461 (+) 330 WP_003632466.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 77983.04 Da        Isoelectric Point: 9.5391

>NTDB_id=226963 B0B39_RS04410 WP_012978911.1 994821..996926(+) (pilQ) [Legionella longbeachae strain F1157CHC]
MQRIVVFLILIGMSLGLAFAQNNSLISVKVIPLPEEKLRIDFIFAYPVKKQPGNFVIENPARIVIDFVDTNLQLPTEQKT
KEIKFGSLASYTLVTVGARVRAVLDLKYAVPYLGSVSGKVYTIILNGKSNELFQAPKEMLITNRPVKTSYEITHFDFRGV
ERQAGRAVVDVSSASIPIDVEEHDKEIIVKFLNTKVPQNLRKRFDVSDFRSPVNLITLQQDGKNARMTLMGDRYFGHNIY
QINKQFMVDVFPLTQEEIEQEKLKKQVFSGRRISLNFQNISIRSVLQLLADFTGINIVASDRVQGNITLRLNNIPWDQAL
DIILKTQGLAQRQNGNVMVIDTQKSFNDMEEQQLKSQHKIQRLEPVRSELIQINYAKATDLAILIKDRQNSLLSDKGKVS
VDTRTNTIWIQDSGSRVDEVRKLIKELDVPVKQVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA
DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRLITANQQPALIDSGQEIPYQQ
STSSGATAVAFKKAVLSLKVIPQITPDNKILMDLKINQDLALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDK
SKTITRVPFFGQLPVVGNLFKNTQIGVHNDELLIFITPKIITNSLSITTIEGRNPVRFDEK

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=226963 B0B39_RS04410 WP_012978911.1 994821..996926(+) (pilQ) [Legionella longbeachae strain F1157CHC]
GTGCAAAGAATAGTTGTTTTTTTAATCTTGATAGGAATGAGCTTGGGCTTGGCTTTTGCTCAGAATAACTCTTTGATATC
CGTAAAGGTGATTCCTTTGCCGGAGGAGAAGTTACGTATCGACTTTATATTTGCTTATCCGGTTAAAAAACAACCAGGTA
ATTTTGTAATCGAAAATCCGGCACGCATTGTTATAGATTTTGTTGACACTAATTTACAGTTACCCACTGAGCAGAAAACG
AAGGAAATTAAATTTGGTTCTCTGGCTAGCTATACTCTTGTAACTGTTGGTGCCCGTGTTCGAGCTGTTTTGGATTTAAA
ATACGCTGTGCCATATTTAGGCTCAGTTTCAGGCAAGGTTTATACGATTATTTTAAATGGTAAGAGCAATGAATTATTTC
AAGCCCCTAAAGAAATGTTGATTACCAATCGTCCAGTAAAAACAAGTTATGAAATTACCCATTTTGATTTTCGAGGAGTT
GAACGCCAGGCAGGACGTGCGGTTGTTGATGTTTCGAGCGCCAGTATTCCAATTGATGTAGAAGAGCATGACAAGGAAAT
TATAGTTAAATTTTTAAATACTAAAGTGCCGCAAAATTTAAGGAAACGTTTTGATGTTTCTGATTTTCGCAGTCCGGTGA
ATTTGATTACCTTGCAACAGGATGGAAAAAATGCGCGTATGACCTTAATGGGCGATAGATATTTTGGTCACAATATCTAT
CAGATTAACAAACAGTTTATGGTTGATGTATTTCCGTTGACTCAGGAAGAAATTGAACAGGAAAAACTTAAGAAACAGGT
ATTTTCTGGAAGACGGATTTCTTTAAATTTCCAAAATATCAGCATACGATCAGTATTACAGTTACTTGCTGATTTCACAG
GGATAAATATTGTTGCAAGTGACAGAGTTCAAGGGAATATTACTTTACGGTTAAATAATATTCCCTGGGATCAAGCATTA
GATATTATTTTAAAAACCCAAGGCCTGGCACAGCGCCAAAATGGAAATGTAATGGTGATCGACACGCAAAAATCGTTTAA
TGACATGGAGGAGCAGCAACTTAAGAGCCAACATAAAATCCAAAGACTGGAACCCGTACGTTCCGAACTCATACAAATTA
ATTATGCCAAAGCGACCGATCTCGCAATTTTAATTAAAGACAGACAAAACTCACTTTTATCCGACAAAGGTAAAGTCAGT
GTCGATACACGTACGAATACTATATGGATCCAAGATAGTGGTAGTAGAGTAGATGAGGTCAGAAAGTTAATAAAGGAATT
GGATGTTCCTGTAAAACAGGTACTGATTGAAGCCCGTATTGTTGAGGTGACTAAAGATTTTGCCCAGGATTTAGGTATAC
GTTGGGGGGTTTCCAAGCCGCAACATTTAAGCGGTACTCTAGCTGGGGCAAATCAATTGGCGCAAGGGGTTGCTCCTGCA
GATGTTACACCTTTTACGGACAGATTGAATTTGGATTTGGTAGCAGCCCCTTTGACAAAGGCAAATCCAGCTACAGTAGG
AATTGCTTTAGCGCAGCTTGGCGACAATATATTGCTTGATTTGGAGCTTTCAGCTTTAGAAAGTGAAGGACTCGCAGAGC
TAATTTCCAGCCCCAGGTTAATTACAGCAAACCAGCAGCCTGCATTAATTGACTCAGGCCAAGAAATTCCTTATCAACAA
TCAACTTCTAGTGGTGCAACTGCAGTAGCATTTAAAAAGGCAGTCTTGAGTTTAAAAGTAATACCACAAATTACTCCTGA
TAACAAAATCCTTATGGATTTAAAGATTAATCAGGATCTTGCATTACCTAATCAGACTTATAATGGGGTTCCAGCAATTG
CAACTAAAGAAATTCAGACCAATGTTTTAGTGAGCAATGGACAAACTATTGTATTGGGAGGGATTTATCAACAAGATAAA
AGCAAGACAATTACTCGCGTGCCTTTTTTTGGCCAATTGCCGGTAGTAGGGAATTTATTTAAAAATACACAAATTGGTGT
TCACAATGATGAGCTACTTATTTTTATAACTCCTAAAATAATAACGAATTCATTATCTATCACTACTATTGAGGGGCGAA
ATCCAGTACGTTTTGATGAAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(525-681)

Secretin and TonB N terminus short domain (STN)

(296-340)

AMIN domain (AMIN)

(41-112)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

70.31

96.576

0.679
  pilQ Legionella pneumophila strain ERS1305867

70.37

96.291

0.678
  pilQ Pseudomonas aeruginosa PAK

36.298

99.429

0.361

Multiple sequence alignment