Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   B9C53_RS17850 Genome accession   NZ_CP020874
Coordinates   3631705..3632040 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3626705..3637040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS17800 (B9C53_17740) comGC 3626937..3627203 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  B9C53_RS17805 (B9C53_17745) comGD 3627193..3627630 (+) 438 WP_038459181.1 competence type IV pilus minor pilin ComGD Machinery gene
  B9C53_RS17810 (B9C53_17750) comGE 3627614..3627928 (+) 315 WP_038459179.1 competence type IV pilus minor pilin ComGE Machinery gene
  B9C53_RS17815 (B9C53_17755) comGF 3627837..3628337 (+) 501 WP_228842201.1 competence type IV pilus minor pilin ComGF -
  B9C53_RS17820 (B9C53_17760) comGG 3628338..3628715 (+) 378 WP_038459177.1 competence type IV pilus minor pilin ComGG Machinery gene
  B9C53_RS17825 (B9C53_17765) - 3628772..3628951 (+) 180 WP_022552966.1 YqzE family protein -
  B9C53_RS17830 (B9C53_17770) - 3628992..3629321 (-) 330 WP_038459175.1 DUF3889 domain-containing protein -
  B9C53_RS17835 (B9C53_17775) tapA 3629580..3630251 (+) 672 WP_108655004.1 amyloid fiber anchoring/assembly protein TapA -
  B9C53_RS17840 (B9C53_17780) sipW 3630223..3630807 (+) 585 WP_012117977.1 signal peptidase I SipW -
  B9C53_RS17845 (B9C53_17785) tasA 3630872..3631657 (+) 786 WP_044802563.1 biofilm matrix protein TasA -
  B9C53_RS17850 (B9C53_17790) sinR 3631705..3632040 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  B9C53_RS17855 (B9C53_17795) sinI 3632074..3632247 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  B9C53_RS17860 (B9C53_17800) - 3632424..3633218 (-) 795 WP_015240204.1 YqhG family protein -
  B9C53_RS17865 (B9C53_17805) - 3633240..3634910 (-) 1671 WP_108655005.1 DEAD/DEAH box helicase -
  B9C53_RS17870 (B9C53_17810) gcvT 3635334..3636435 (+) 1102 Protein_3436 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=226808 B9C53_RS17850 WP_003153104.1 3631705..3632040(-) (sinR) [Bacillus velezensis strain GYL4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=226808 B9C53_RS17850 WP_003153104.1 3631705..3632040(-) (sinR) [Bacillus velezensis strain GYL4]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment