Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   B9C53_RS17805 Genome accession   NZ_CP020874
Coordinates   3627193..3627630 (+) Length   145 a.a.
NCBI ID   WP_038459181.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3622193..3632630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS17780 (B9C53_17720) - 3622202..3623503 (-) 1302 WP_038459188.1 hemolysin family protein -
  B9C53_RS17785 (B9C53_17725) - 3623649..3624599 (+) 951 WP_032874012.1 magnesium transporter CorA family protein -
  B9C53_RS17790 (B9C53_17730) comGA 3624796..3625866 (+) 1071 WP_038459186.1 competence type IV pilus ATPase ComGA Machinery gene
  B9C53_RS17795 (B9C53_17735) comGB 3625853..3626890 (+) 1038 WP_038459183.1 competence type IV pilus assembly protein ComGB Machinery gene
  B9C53_RS17800 (B9C53_17740) comGC 3626937..3627203 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  B9C53_RS17805 (B9C53_17745) comGD 3627193..3627630 (+) 438 WP_038459181.1 competence type IV pilus minor pilin ComGD Machinery gene
  B9C53_RS17810 (B9C53_17750) comGE 3627614..3627928 (+) 315 WP_038459179.1 competence type IV pilus minor pilin ComGE Machinery gene
  B9C53_RS17815 (B9C53_17755) comGF 3627837..3628337 (+) 501 WP_228842201.1 competence type IV pilus minor pilin ComGF -
  B9C53_RS17820 (B9C53_17760) comGG 3628338..3628715 (+) 378 WP_038459177.1 competence type IV pilus minor pilin ComGG Machinery gene
  B9C53_RS17825 (B9C53_17765) - 3628772..3628951 (+) 180 WP_022552966.1 YqzE family protein -
  B9C53_RS17830 (B9C53_17770) - 3628992..3629321 (-) 330 WP_038459175.1 DUF3889 domain-containing protein -
  B9C53_RS17835 (B9C53_17775) tapA 3629580..3630251 (+) 672 WP_108655004.1 amyloid fiber anchoring/assembly protein TapA -
  B9C53_RS17840 (B9C53_17780) sipW 3630223..3630807 (+) 585 WP_012117977.1 signal peptidase I SipW -
  B9C53_RS17845 (B9C53_17785) tasA 3630872..3631657 (+) 786 WP_044802563.1 biofilm matrix protein TasA -
  B9C53_RS17850 (B9C53_17790) sinR 3631705..3632040 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  B9C53_RS17855 (B9C53_17795) sinI 3632074..3632247 (-) 174 WP_003153105.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16286.82 Da        Isoelectric Point: 10.1850

>NTDB_id=226805 B9C53_RS17805 WP_038459181.1 3627193..3627630(+) (comGD) [Bacillus velezensis strain GYL4]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAMRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=226805 B9C53_RS17805 WP_038459181.1 3627193..3627630(+) (comGD) [Bacillus velezensis strain GYL4]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCATGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCATATTACACTTGTGACTTTACCAGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATAACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

54.795

100

0.552

Multiple sequence alignment