Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PD_RS02420 Genome accession   NC_004556
Coordinates   551715..553235 (+) Length   506 a.a.
NCBI ID   WP_004090148.1    Uniprot ID   Q87E57
Organism   Xylella fastidiosa Temecula1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 546715..558235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS02390 (PD0458) rpsM 547646..548002 (+) 357 WP_004090134.1 30S ribosomal protein S13 -
  PD_RS02395 (PD0459) rpsK 548018..548410 (+) 393 WP_004090135.1 30S ribosomal protein S11 -
  PD_RS02400 (PD0460) rpsD 548425..549051 (+) 627 WP_004090136.1 30S ribosomal protein S4 -
  PD_RS02405 (PD0461) rpoA 549106..550104 (+) 999 WP_004090142.1 DNA-directed RNA polymerase subunit alpha -
  PD_RS02410 (PD0462) rplQ 550236..550616 (+) 381 WP_004090145.1 50S ribosomal protein L17 -
  PD_RS02415 (PD0463) - 551444..551704 (+) 261 WP_004086547.1 accessory factor UbiK family protein -
  PD_RS02420 (PD0464) comM 551715..553235 (+) 1521 WP_004090148.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PD_RS02425 - 554468..554722 (+) 255 WP_014607632.1 hypothetical protein -
  PD_RS02430 (PD0465) - 555728..556861 (+) 1134 WP_012382466.1 esterase/lipase family protein -
  PD_RS02435 (PD0466) - 556862..557923 (+) 1062 WP_011097653.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54556.68 Da        Isoelectric Point: 8.2048

>NTDB_id=22648 PD_RS02420 WP_004090148.1 551715..553235(+) (comM) [Xylella fastidiosa Temecula1]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRFEVKSDVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGVQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGLDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDSRTLQYNRQAGLNAHLGQAATERHCCLDATDQRLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=22648 PD_RS02420 WP_004090148.1 551715..553235(+) (comM) [Xylella fastidiosa Temecula1]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCCCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGCCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGCGGTCAACTGCCACTTGATGCTTTAGCAGGTAAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGCACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCTGGCTGCTCAGAGATTCGAAGTTAAGTCTGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAGGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGCGGTAAAACTCTTTTAGCCTCAAGATTGCCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGCGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGTACAGGCACGTCCTGGTGAGATCTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGCAAAACCTTGGAAGCCTTACGTGAACCCATG
GAATCTGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTAGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTTTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCGTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGCCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTTACTGATTCCAGGACTTTGCAATATAATCGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGCCACCGACCAGCGTTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGCGTGGCACGCACCATTGCCGATTTGGATGGT
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTTGACCGTACAGCCTTTGGCATTGCTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87E57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.8

98.814

0.532
  comM Vibrio campbellii strain DS40M4

53.6

98.814

0.53
  comM Haemophilus influenzae Rd KW20

52.286

99.407

0.52
  comM Glaesserella parasuis strain SC1401

51.881

99.802

0.518
  comM Legionella pneumophila str. Paris

50

98.814

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.814

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.275

100

0.439

Multiple sequence alignment