Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ECA_RS20930 Genome accession   NC_004547
Coordinates   4733613..4735139 (+) Length   508 a.a.
NCBI ID   WP_011095701.1    Uniprot ID   -
Organism   Pectobacterium atrosepticum SCRI1043     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4728613..4740139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECA_RS20915 (ECA4227) - 4730043..4730969 (-) 927 WP_011095698.1 branched-chain amino acid transaminase -
  ECA_RS20920 (ECA4228) ilvM 4730994..4731254 (-) 261 WP_011095699.1 acetolactate synthase 2 small subunit -
  ECA_RS20925 (ECA4229) ilvG 4731332..4732978 (-) 1647 WP_011095700.1 acetolactate synthase 2 catalytic subunit -
  ECA_RS23260 ilvL 4733119..4733217 (-) 99 WP_071531109.1 ilv operon leader peptide -
  ECA_RS20930 (ECA4230) comM 4733613..4735139 (+) 1527 WP_011095701.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ECA_RS20935 (ECA4231) - 4735197..4735535 (-) 339 WP_011095702.1 DUF413 domain-containing protein -
  ECA_RS20940 (ECA4232) hdfR 4735656..4736483 (+) 828 WP_011095703.1 HTH-type transcriptional regulator HdfR -
  ECA_RS20945 (ECA4233) yjfF 4736505..4737467 (-) 963 WP_011095704.1 galactofuranose ABC transporter, permease protein YjfF -
  ECA_RS20950 (ECA4234) ytfT 4737467..4738477 (-) 1011 WP_011095705.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ECA_RS20955 (ECA4235) ytfR 4738464..4739984 (-) 1521 WP_039295311.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55551.29 Da        Isoelectric Point: 6.9623

>NTDB_id=22632 ECA_RS20930 WP_011095701.1 4733613..4735139(+) (comM) [Pectobacterium atrosepticum SCRI1043]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLNRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LQVCAFLSGEEELLSCSDMTPVPQPAEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIERHCKLEMADAAYLEDVMNKLGLSVRAWHRILKVARTIADLGDRD
NIEKKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=22632 ECA_RS20930 WP_011095701.1 4733613..4735139(+) (comM) [Pectobacterium atrosepticum SCRI1043]
ATGTCATTGGCAGTTACCTACACTCGGGCAATGATTGGTGTACAAGCTCCGGATGTTTACATCGAAGTTCACATCAGCAG
CGGGTTACCTGCATTAACGCTGGTGGGGTTACCAGAAACCACCGTCAAAGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGGTTTACGTTTCCAGCAAAGCGCATCACAGTCAACCTCGCACCGGCAGACTTGCCCAAAGAAGGGGGACGC
TACGACTTGCCCATTGCTCTGGCGATTCTGGCAGCATCAGAACAAATCGATGGTGAAAAGCTAAACCGCTATGAGTTTCT
CGGCGAACTCGGCCTCTCAGGCACGTTACGTGGCGTAAATGGCGCGATTCCAGCCGCATTAGAAGCCATAAAAGCAGGCC
GTCAGCTTATCCTGCCAGATGACAACAAACGGGAGATGACGCTGATACCGCAGGGAGAAGCGCTAATGGCTGGGCATCTG
TTGCAGGTGTGTGCTTTTCTCAGCGGAGAAGAGGAACTACTCAGTTGCTCCGATATGACGCCCGTTCCGCAGCCTGCGGA
AGATACGCTCGACCTGAAGGATATTATCGGTCAGGAGCAAGCTAAACGCGCGCTAGAAATCGCGGCAGCAGGCGGCCACA
ATCTGCTGTTGCTAGGGCCACCTGGAACAGGGAAAACAATGCTGGCAAGTCGGCTAGGCAATCTGATGCCGCCATTGAGC
GATGAAGAAGCGTTAGAAAGCGCCGCGATCAATAGCCTAATCAACATTGATGCCACAATGACGCGCTGGAGAGCAAGACC
CTTCAGAGCGCCTCACCATAGCTCTTCCATGGCTGCACTCGTGGGTGGAGGGTCGCTGCCCAAACCCGGCGAAATTTCGC
TCGCACACAACGGTGTACTGTTTCTAGATGAATTACCAGAGTTTGAGCGACGCGTTCTGGACTCACTACGAGAGCCTCTG
GAATCTGGTGAAATTATCATTTCCCGCACTCGCGCCAAAGTGTGCTATCCGGCACGCGTACAACTCGTCGCCGCGATGAA
CCCCAGTCCGTCGGGCCATTATCAGGGCATTCATAACCGGTTACCTGCACAACAAATATTGCGCTATCTCAGCAAACTTT
CTGGCCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAACAACATTAT
CAAGGCGAAAGCAGCGCGACGATTCGTGAGCGCGTGCTGATCGCAAGGCAGATACAGTTGAAGCGGGCAAATAAAATCAA
TGCGCTGCTAACTTCACGCGAAATAGAAAGACACTGCAAATTGGAGATGGCCGATGCGGCCTATCTGGAAGACGTGATGA
ATAAACTTGGCTTATCCGTACGCGCCTGGCATAGGATATTGAAAGTCGCTCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATTGAGAAAAAGCATCTTGCCGAAGCACTGAGCTACCGTTGTATGGATCGATTGCTTATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Glaesserella parasuis strain SC1401

63.654

100

0.638
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Vibrio campbellii strain DS40M4

62.451

99.606

0.622
  comM Legionella pneumophila str. Paris

50.501

98.228

0.496
  comM Legionella pneumophila strain ERS1305867

50.501

98.228

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.498

100

0.47

Multiple sequence alignment