Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B9G72_RS15590 Genome accession   NZ_CP020819
Coordinates   3305032..3306534 (-) Length   500 a.a.
NCBI ID   WP_010926358.1    Uniprot ID   A0A0H3LRL0
Organism   Bordetella bronchiseptica strain D973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3288503..3304696 3305032..3306534 flank 336


Gene organization within MGE regions


Location: 3288503..3306534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9G72_RS15470 (B9G72_15470) - 3288503..3288634 (-) 132 WP_003812797.1 entericidin A/B family lipoprotein -
  B9G72_RS15475 (B9G72_15475) - 3288810..3289550 (+) 741 WP_232826602.1 endonuclease -
  B9G72_RS15480 (B9G72_15480) - 3289692..3290024 (-) 333 WP_003812801.1 hypothetical protein -
  B9G72_RS15490 (B9G72_15490) - 3290293..3290631 (+) 339 WP_050484264.1 hypothetical protein -
  B9G72_RS15495 (B9G72_15495) - 3290615..3292228 (+) 1614 WP_003812803.1 PLP-dependent aminotransferase family protein -
  B9G72_RS15500 (B9G72_15500) - 3292343..3292624 (-) 282 WP_003812804.1 hypothetical protein -
  B9G72_RS15505 (B9G72_15505) - 3292728..3293330 (+) 603 WP_003812806.1 hypothetical protein -
  B9G72_RS15510 (B9G72_15510) - 3293401..3293859 (+) 459 WP_033446510.1 Lrp/AsnC family transcriptional regulator -
  B9G72_RS15515 (B9G72_15515) - 3293877..3294230 (+) 354 WP_003812810.1 hypothetical protein -
  B9G72_RS15520 (B9G72_15520) blaBOR 3294245..3295162 (-) 918 WP_033451071.1 BOR family class A beta-lactamase -
  B9G72_RS15525 (B9G72_15525) - 3295287..3295664 (+) 378 WP_003812814.1 DUF1090 domain-containing protein -
  B9G72_RS15530 (B9G72_15530) - 3295667..3296140 (+) 474 WP_010926362.1 GNAT family N-acetyltransferase -
  B9G72_RS15535 (B9G72_15535) - 3296263..3296976 (+) 714 WP_003812818.1 class I SAM-dependent methyltransferase -
  B9G72_RS15540 (B9G72_15540) - 3297233..3297415 (+) 183 WP_004567479.1 hypothetical protein -
  B9G72_RS15545 (B9G72_15545) - 3297515..3298111 (-) 597 WP_010926361.1 lipoprotein -
  B9G72_RS15550 (B9G72_15550) - 3298295..3299386 (+) 1092 WP_015064069.1 hypothetical protein -
  B9G72_RS15560 (B9G72_15560) - 3299781..3300191 (-) 411 WP_003812822.1 MerR family transcriptional regulator -
  B9G72_RS15565 (B9G72_15565) - 3300250..3300591 (-) 342 WP_003812826.1 integration host factor subunit alpha -
  B9G72_RS15570 (B9G72_15570) pheT 3300597..3303014 (-) 2418 WP_010926360.1 phenylalanine--tRNA ligase subunit beta -
  B9G72_RS15575 (B9G72_15575) pheS 3303027..3304049 (-) 1023 WP_010926359.1 phenylalanine--tRNA ligase subunit alpha -
  B9G72_RS15580 (B9G72_15580) rplT 3304124..3304483 (-) 360 WP_003812832.1 50S ribosomal protein L20 -
  B9G72_RS15585 (B9G72_15585) rpmI 3304499..3304696 (-) 198 WP_003812834.1 50S ribosomal protein L35 -
  B9G72_RS15590 (B9G72_15590) comM 3305032..3306534 (-) 1503 WP_010926358.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52207.25 Da        Isoelectric Point: 8.8352

>NTDB_id=226112 B9G72_RS15590 WP_010926358.1 3305032..3306534(-) (comM) [Bordetella bronchiseptica strain D973]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPT

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=226112 B9G72_RS15590 WP_010926358.1 3305032..3306534(-) (comM) [Bordetella bronchiseptica strain D973]
ATGACCCTGGCCGTATTGGCCAGCCGGGCGATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCCATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATTACCGTCAACCTGTCGCCCGCCGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGATTGCGTGTGGGCGGCCGAACTGTCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGTGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCGGCCGAGCGCCGCAG
CTGGCCCGAGGCCGAACCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAGGTGGCGGCCATCGCGGGCGCCGGCGGGGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTCCGGGCCCCGCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCCCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCGGGCGCTGCACAGCGTCGAGTATCCCGCCGTATTCCAGCTGGTTGC
GGCCATGAATCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAACCGCCGGGCGAGCCCTCCCTTCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAGTTGGCCCGCCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTCGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCACGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3LRL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.907

100

0.492
  comM Vibrio campbellii strain DS40M4

48.207

100

0.484
  comM Legionella pneumophila strain ERS1305867

45.312

100

0.464
  comM Legionella pneumophila str. Paris

45.312

100

0.464
  comM Haemophilus influenzae Rd KW20

45.562

100

0.462
  comM Glaesserella parasuis strain SC1401

45.079

100

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.157

100

0.43

Multiple sequence alignment