Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B9G73_RS15615 Genome accession   NZ_CP020818
Coordinates   3295983..3297485 (-) Length   500 a.a.
NCBI ID   WP_033465833.1    Uniprot ID   -
Organism   Bordetella bronchiseptica strain F709     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3290983..3302485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9G73_RS15590 (B9G73_15570) - 3291201..3291542 (-) 342 WP_003812826.1 integration host factor subunit alpha -
  B9G73_RS15595 (B9G73_15575) pheT 3291548..3293965 (-) 2418 WP_033457078.1 phenylalanine--tRNA ligase subunit beta -
  B9G73_RS15600 (B9G73_15580) pheS 3293978..3295000 (-) 1023 WP_010926359.1 phenylalanine--tRNA ligase subunit alpha -
  B9G73_RS15605 (B9G73_15585) rplT 3295075..3295434 (-) 360 WP_003812832.1 50S ribosomal protein L20 -
  B9G73_RS15610 (B9G73_15590) rpmI 3295450..3295647 (-) 198 WP_003812834.1 50S ribosomal protein L35 -
  B9G73_RS15615 (B9G73_15595) comM 3295983..3297485 (-) 1503 WP_033465833.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B9G73_RS15620 (B9G73_15600) - 3297592..3297858 (-) 267 WP_010931105.1 accessory factor UbiK family protein -
  B9G73_RS15625 (B9G73_15605) - 3298566..3298904 (+) 339 WP_042997125.1 P-II family nitrogen regulator -
  B9G73_RS15630 (B9G73_15610) amt 3298930..3300168 (+) 1239 WP_003820413.1 ammonium transporter -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52177.23 Da        Isoelectric Point: 8.8352

>NTDB_id=226097 B9G73_RS15615 WP_033465833.1 3295983..3297485(-) (comM) [Bordetella bronchiseptica strain F709]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=226097 B9G73_RS15615 WP_033465833.1 3295983..3297485(-) (comM) [Bordetella bronchiseptica strain F709]
ATGACCCTGGCCGTATTGGCCAGCCGGGCAATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCCATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATCACCGTCAACCTGTCGCCCGCCGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGACTGCGTGTGGGCGGCCGAGCTGTCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGCGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCAGCCGAGCGCCGCAG
CTGGCCCGAGGCCGAACCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAGGTGGCGGCCATCGCGGGCGCCGGCGGGGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTCCGGGCCCCCCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCCCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCGGGCGCTGCACAGCGTCGAGTACCCCGCCGTATTCCAGCTGGTGGC
GGCCATGAACCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAACCGCCGGGCGAGCCCTCCCTCCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAATTGGCCCGTCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTCGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.907

100

0.492
  comM Vibrio campbellii strain DS40M4

48.207

100

0.484
  comM Legionella pneumophila strain ERS1305867

45.312

100

0.464
  comM Legionella pneumophila str. Paris

45.312

100

0.464
  comM Haemophilus influenzae Rd KW20

45.562

100

0.462
  comM Glaesserella parasuis strain SC1401

45.079

100

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.157

100

0.43

Multiple sequence alignment