Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HM131_RS01305 Genome accession   NZ_CP020772
Coordinates   224421..224909 (+) Length   162 a.a.
NCBI ID   WP_085027173.1    Uniprot ID   A0A1W5ZQI8
Organism   Halobacillus mangrovi strain KTB 131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 219421..229909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HM131_RS01275 (HM131_01275) yyaC 219712..220338 (-) 627 WP_085027163.1 spore protease YyaC -
  HM131_RS01280 (HM131_01280) - 220434..221453 (+) 1020 WP_085027165.1 hypothetical protein -
  HM131_RS01285 (HM131_01285) - 221576..222433 (+) 858 WP_232324914.1 mechanosensitive ion channel family protein -
  HM131_RS01290 (HM131_01290) - 222451..222651 (+) 201 WP_085027167.1 DUF951 domain-containing protein -
  HM131_RS01295 (HM131_01295) ychF 222878..223975 (+) 1098 WP_085027170.1 redox-regulated ATPase YchF -
  HM131_RS01300 (HM131_01300) rpsF 224115..224408 (+) 294 WP_085027172.1 30S ribosomal protein S6 -
  HM131_RS01305 (HM131_01305) ssbA 224421..224909 (+) 489 WP_085027173.1 single-stranded DNA-binding protein Machinery gene
  HM131_RS01310 (HM131_01310) rpsR 224931..225158 (+) 228 WP_085027175.1 30S ribosomal protein S18 -
  HM131_RS01315 (HM131_01315) - 225233..225670 (-) 438 WP_085027177.1 Rrf2 family transcriptional regulator -
  HM131_RS01320 (HM131_01320) hmpA 225848..227068 (+) 1221 WP_085027180.1 NO-inducible flavohemoprotein -
  HM131_RS01325 (HM131_01325) - 227099..227734 (-) 636 WP_085027182.1 YitT family protein -
  HM131_RS01330 (HM131_01330) - 227881..229506 (-) 1626 WP_408607128.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17684.25 Da        Isoelectric Point: 4.5807

>NTDB_id=225776 HM131_RS01305 WP_085027173.1 224421..224909(+) (ssbA) [Halobacillus mangrovi strain KTB 131]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNKQGEQDADFINCVVWRRAAENLANFMSKGSQVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGSSQGGGNRGGSGFQPNQNQQPSGNNFGSNNNNQRNDDPFADNGEPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=225776 HM131_RS01305 WP_085027173.1 224421..224909(+) (ssbA) [Halobacillus mangrovi strain KTB 131]
ATGTTGAATCGTGTCGTATTAGTCGGCAGATTAACGAAGGATCCTGATTTACGCTACACGCCAAACGGAGTAGCCGTAGC
CAATTTCACAATTGCAGTGAACCGTCCGTTCTCCAACAAACAAGGAGAACAAGATGCGGATTTCATTAATTGTGTGGTTT
GGAGACGCGCTGCAGAAAACTTAGCCAACTTTATGAGTAAAGGCAGTCAAGTTGGAGTGGACGGACGCTTACAGTCCCGC
AGCTTCGACAATCAGGAAGGCAAGCGTGTATTTGTAACAGAAGTTGTTGCAGATAGCGTACAGTTCCTAGAATCCAAAGG
TTCTTCCCAGGGTGGAGGAAATCGTGGAGGCTCAGGATTCCAACCGAATCAGAATCAACAACCATCAGGAAACAACTTCG
GTTCTAACAATAACAACCAACGAAATGATGACCCATTCGCAGACAATGGGGAACCAATCGATATATCAGATGACGATTTA
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W5ZQI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.535

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.432

0.395
  ssb Glaesserella parasuis strain SC1401

35.593

100

0.389
  ssb Vibrio cholerae strain A1552

33.52

100

0.37

Multiple sequence alignment