Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | C2842_RS02275 | Genome accession | NZ_CP026324 |
| Coordinates | 461792..462058 (-) | Length | 88 a.a. |
| NCBI ID | WP_001173702.1 | Uniprot ID | O25190 |
| Organism | Helicobacter pylori strain 26695-dRdM2 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 456792..467058
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2842_RS02265 (C2842_02275) | - | 457340..459373 (-) | 2034 | WP_000655392.1 | type IA DNA topoisomerase | - |
| C2842_RS02270 (C2842_02280) | comB4 | 459376..461745 (-) | 2370 | WP_229311984.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| C2842_RS02275 (C2842_02285) | comB3 | 461792..462058 (-) | 267 | WP_001173702.1 | hypothetical protein | Machinery gene |
| C2842_RS02280 (C2842_02290) | - | 462059..462361 (-) | 303 | WP_000850076.1 | hypothetical protein | - |
| C2842_RS02285 (C2842_02295) | - | 462358..463881 (-) | 1524 | WP_000323332.1 | hypothetical protein | - |
| C2842_RS02290 (C2842_02300) | - | 463888..464181 (-) | 294 | WP_001160324.1 | hypothetical protein | - |
| C2842_RS02295 (C2842_02305) | - | 464200..464979 (-) | 780 | WP_001158055.1 | hypothetical protein | - |
| C2842_RS02300 (C2842_02310) | - | 465024..466169 (+) | 1146 | WP_001862501.1 | DEAD/DEAH box helicase family protein | - |
| C2842_RS02305 (C2842_02315) | - | 466166..466552 (+) | 387 | WP_000691910.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10177.01 Da Isoelectric Point: 4.8782
>NTDB_id=225246 C2842_RS02275 WP_001173702.1 461792..462058(-) (comB3) [Helicobacter pylori strain 26695-dRdM2]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITAILHALFTLR
TGARNYYA
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITAILHALFTLR
TGARNYYA
Nucleotide
Download Length: 267 bp
>NTDB_id=225246 C2842_RS02275 WP_001173702.1 461792..462058(-) (comB3) [Helicobacter pylori strain 26695-dRdM2]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTATATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTATATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
42.169 |
94.318 |
0.398 |