Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VV1_RS04935 Genome accession   NC_004459
Coordinates   1036476..1037999 (+) Length   507 a.a.
NCBI ID   WP_011079067.1    Uniprot ID   A0A3Q0L311
Organism   Vibrio vulnificus CMCP6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031476..1042999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS04920 (VV1_1030) ilvE 1033114..1034052 (-) 939 WP_011079064.1 branched-chain-amino-acid transaminase -
  VV1_RS04925 (VV1_1031) ilvM 1034064..1034348 (-) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  VV1_RS04930 (VV1_1032) ilvG 1034360..1036006 (-) 1647 WP_011079066.1 acetolactate synthase 2 catalytic subunit -
  VV1_RS04935 (VV1_1033) comM 1036476..1037999 (+) 1524 WP_011079067.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VV1_RS04940 (VV1_1034) - 1038038..1039012 (-) 975 WP_011079068.1 DUF2860 domain-containing protein -
  VV1_RS04945 (VV1_1035) - 1039155..1040036 (+) 882 WP_011079069.1 acyltransferase -
  VV1_RS04950 (VV1_1036) - 1040090..1040695 (-) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  VV1_RS04955 (VV1_1037) - 1040728..1041714 (-) 987 WP_011079071.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54725.91 Da        Isoelectric Point: 9.1030

>NTDB_id=22523 VV1_RS04935 WP_011079067.1 1036476..1037999(+) (comM) [Vibrio vulnificus CMCP6]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
IMRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=22523 VV1_RS04935 WP_011079067.1 1036476..1037999(+) (comM) [Vibrio vulnificus CMCP6]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTCGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTTCAGCAACATGAATTTGT
CGGTGAATTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTGCTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGCCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTAGGGCCTCCAGGGACGGGCAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAAGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAATGAGCATAATTGGAAGCAACGGCCGTT
TCGCGCACCGCATCACTCGAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCGCGTCCTGGAGAAATCTCACTCG
CCCACAACGGCTTACTATTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAAGGTAAAACTCGTTTTCCTGCTCGATTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGAGACCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCGAATGCAGCATCGTAATGGCAAGGTGAATGC
CCTATTGGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACTGCGTTGCACC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATTATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCATGCGTGCGCACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L311

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment