Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B7P04_RS15605 Genome accession   NZ_CP020650
Coordinates   3304192..3305694 (-) Length   500 a.a.
NCBI ID   WP_010926358.1    Uniprot ID   A0A0H3LRL0
Organism   Bordetella bronchiseptica strain E001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3305831..3306781 3304192..3305694 flank 137


Gene organization within MGE regions


Location: 3304192..3306781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P04_RS15605 (B7P04_15580) comM 3304192..3305694 (-) 1503 WP_010926358.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B7P04_RS15610 (B7P04_15585) - 3305831..3306781 (-) 951 WP_033458878.1 IS481 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52207.25 Da        Isoelectric Point: 8.8352

>NTDB_id=225193 B7P04_RS15605 WP_010926358.1 3304192..3305694(-) (comM) [Bordetella bronchiseptica strain E001]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPT

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=225193 B7P04_RS15605 WP_010926358.1 3304192..3305694(-) (comM) [Bordetella bronchiseptica strain E001]
ATGACCCTGGCCGTATTGGCCAGCCGGGCGATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCCATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATTACCGTCAACCTGTCGCCCGCCGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGATTGCGTGTGGGCGGCCGAACTGTCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGTGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCGGCCGAGCGCCGCAG
CTGGCCCGAGGCCGAACCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAGGTGGCGGCCATCGCGGGCGCCGGCGGGGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTCCGGGCCCCGCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCCCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCGGGCGCTGCACAGCGTCGAGTATCCCGCCGTATTCCAGCTGGTTGC
GGCCATGAATCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAACCGCCGGGCGAGCCCTCCCTTCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAGTTGGCCCGCCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTCGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCACGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3LRL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.907

100

0.492
  comM Vibrio campbellii strain DS40M4

48.207

100

0.484
  comM Legionella pneumophila strain ERS1305867

45.312

100

0.464
  comM Legionella pneumophila str. Paris

45.312

100

0.464
  comM Haemophilus influenzae Rd KW20

45.562

100

0.462
  comM Glaesserella parasuis strain SC1401

45.079

100

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.157

100

0.43

Multiple sequence alignment