Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VV1_RS00080 Genome accession   NC_004459
Coordinates   18143..18445 (-) Length   100 a.a.
NCBI ID   WP_011078144.1    Uniprot ID   -
Organism   Vibrio vulnificus CMCP6     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 13143..23445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS00055 - 14592..14852 (+) 261 WP_043920890.1 hypothetical protein -
  VV1_RS00060 (VV1_0013) yfbR 15128..15565 (+) 438 WP_279573863.1 5'-deoxynucleotidase -
  VV1_RS00065 (VV1_0014) - 15571..16902 (+) 1332 WP_011078141.1 anti-phage deoxyguanosine triphosphatase -
  VV1_RS00070 (VV1_0015) - 16924..17532 (-) 609 WP_011078142.1 DTW domain-containing protein -
  VV1_RS00075 (VV1_0016) rrtA 17536..18096 (+) 561 WP_307796316.1 rhombosortase -
  VV1_RS00080 (VV1_0017) comEA 18143..18445 (-) 303 WP_011078144.1 helix-hairpin-helix domain-containing protein Machinery gene
  VV1_RS00085 (VV1_0018) ppiD 18578..20437 (-) 1860 WP_011078145.1 peptidylprolyl isomerase -
  VV1_RS00090 (VV1_0019) - 20614..20886 (-) 273 WP_013572181.1 HU family DNA-binding protein -
  VV1_RS00095 (VV1_0021) lon 21080..23431 (-) 2352 WP_011078147.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10866.71 Da        Isoelectric Point: 9.6573

>NTDB_id=22514 VV1_RS00080 WP_011078144.1 18143..18445(-) (comEA) [Vibrio vulnificus CMCP6]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=22514 VV1_RS00080 WP_011078144.1 18143..18445(-) (comEA) [Vibrio vulnificus CMCP6]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36

Multiple sequence alignment