Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B7P02_RS16145 Genome accession   NZ_CP020645
Coordinates   3414125..3415627 (-) Length   500 a.a.
NCBI ID   WP_033454445.1    Uniprot ID   -
Organism   Bordetella bronchiseptica strain I943     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3409125..3420627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P02_RS16120 (B7P02_16090) - 3409343..3409684 (-) 342 WP_003812826.1 integration host factor subunit alpha -
  B7P02_RS16125 (B7P02_16095) pheT 3409690..3412107 (-) 2418 WP_033454448.1 phenylalanine--tRNA ligase subunit beta -
  B7P02_RS16130 (B7P02_16100) pheS 3412120..3413142 (-) 1023 WP_010926359.1 phenylalanine--tRNA ligase subunit alpha -
  B7P02_RS16135 (B7P02_16105) rplT 3413217..3413576 (-) 360 WP_003812832.1 50S ribosomal protein L20 -
  B7P02_RS16140 (B7P02_16110) rpmI 3413592..3413789 (-) 198 WP_003812834.1 50S ribosomal protein L35 -
  B7P02_RS16145 (B7P02_16115) comM 3414125..3415627 (-) 1503 WP_033454445.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B7P02_RS16150 (B7P02_16120) - 3415734..3416000 (-) 267 WP_010931105.1 accessory factor UbiK family protein -
  B7P02_RS16155 (B7P02_16125) - 3416708..3417046 (+) 339 WP_003812839.1 P-II family nitrogen regulator -
  B7P02_RS16160 (B7P02_16130) amt 3417072..3418310 (+) 1239 WP_003820413.1 ammonium transporter -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52211.25 Da        Isoelectric Point: 8.8352

>NTDB_id=225122 B7P02_RS16145 WP_033454445.1 3414125..3415627(-) (comM) [Bordetella bronchiseptica strain I943]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSFPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=225122 B7P02_RS16145 WP_033454445.1 3414125..3415627(-) (comM) [Bordetella bronchiseptica strain I943]
ATGACCCTGGCCGTATTGGCCAGCCGGGCAATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCCATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATCACCGTCAACCTGTCGCCCGCCGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGACTGCGTGTGGGCGGCCGAGCTGTCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGCGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCAGCCGAGCGCCGCAG
CTGGCCCGAGGCCGAACCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAGGTGGCGGCCATCGCGGGCGCCGGCGGGGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTCCGGGCCCCCCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCCCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCGGGCGCTGCACAGCGTCGAGTACCCCGCCGTATTCCAGCTGGTGGC
GGCCATGAACCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAGCCGCCGGGCGAGCCCTCCTTCCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAATTGGCCCGCCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTTGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.907

100

0.492
  comM Vibrio campbellii strain DS40M4

48.207

100

0.484
  comM Haemophilus influenzae Rd KW20

45.562

100

0.462
  comM Legionella pneumophila str. Paris

45.117

100

0.462
  comM Legionella pneumophila strain ERS1305867

45.117

100

0.462
  comM Glaesserella parasuis strain SC1401

45.079

100

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.157

100

0.43

Multiple sequence alignment