Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B6V88_RS12985 Genome accession   NZ_CP020615
Coordinates   2918307..2918777 (+) Length   156 a.a.
NCBI ID   WP_045098335.1    Uniprot ID   A0A098GEA4
Organism   Legionella micdadei strain NZ2016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2913307..2923777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V88_RS12965 (B6V88_12965) - 2913745..2914998 (+) 1254 WP_284698352.1 formimidoylglutamate deiminase -
  B6V88_RS12970 (B6V88_12970) hutG 2915005..2915790 (+) 786 WP_045098338.1 N-formylglutamate deformylase -
  B6V88_RS12975 (B6V88_12975) fabL 2915848..2916603 (-) 756 WP_083012854.1 enoyl-[acyl-carrier-protein] reductase FabL -
  B6V88_RS12980 (B6V88_12980) - 2916832..2918199 (+) 1368 WP_045098336.1 MFS transporter -
  B6V88_RS12985 (B6V88_12985) ssb 2918307..2918777 (+) 471 WP_045098335.1 single-stranded DNA-binding protein Machinery gene
  B6V88_RS12990 (B6V88_12990) - 2918846..2919535 (-) 690 WP_083012855.1 hypothetical protein -
  B6V88_RS12995 (B6V88_12995) rplQ 2919706..2920092 (-) 387 WP_045098333.1 50S ribosomal protein L17 -
  B6V88_RS13000 (B6V88_13000) rpoA 2920110..2921102 (-) 993 WP_045098332.1 DNA-directed RNA polymerase subunit alpha -
  B6V88_RS13005 (B6V88_13005) rpsD 2921121..2921741 (-) 621 WP_045098331.1 30S ribosomal protein S4 -
  B6V88_RS13010 (B6V88_13010) rpsK 2921759..2922157 (-) 399 WP_045098330.1 30S ribosomal protein S11 -
  B6V88_RS13015 (B6V88_13015) rpsM 2922178..2922531 (-) 354 WP_045098329.1 30S ribosomal protein S13 -
  B6V88_RS13020 (B6V88_13020) rpmJ 2922611..2922724 (-) 114 WP_074454232.1 50S ribosomal protein L36 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17562.49 Da        Isoelectric Point: 5.0106

>NTDB_id=224997 B6V88_RS12985 WP_045098335.1 2918307..2918777(+) (ssb) [Legionella micdadei strain NZ2016]
MARGINKVILVGNVGVDPDVRYMPNGNAVTTLSVATSETWKDKQTGEKQERTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKTGGSVNYEDMPSSPQTQHQPNSRKPQAALSPQDAFDELDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=224997 B6V88_RS12985 WP_045098335.1 2918307..2918777(+) (ssb) [Legionella micdadei strain NZ2016]
ATGGCTCGTGGGATCAATAAAGTTATCTTGGTAGGAAATGTCGGCGTTGACCCAGATGTAAGATATATGCCGAATGGCAA
CGCGGTAACCACCTTATCAGTAGCTACTAGTGAAACATGGAAGGATAAGCAAACTGGAGAAAAACAAGAGCGTACTGAAT
GGCATCGTGTGGTCTGTTTCAATCGGTTAGGCGAAATTGCCGGCGAATACATCCGCAAAGGTTCAAAATTGTATGTTGAA
GGCAGTCTGCGTACTCGTAAATGGCAGGATCAACAGGGGCAAGATCGTTATACAACTGAAATTGTTGCGTCTGATATCCA
AATGCTGGACAGCAAAACTGGTGGTTCCGTTAATTATGAAGATATGCCTTCTTCACCTCAAACACAACACCAACCAAATT
CCCGTAAACCACAAGCAGCTCTTTCACCACAAGACGCTTTTGATGAATTGGATGATGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098GEA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.685

100

0.59
  ssb Vibrio cholerae strain A1552

49.143

100

0.551
  ssb Neisseria meningitidis MC58

41.477

100

0.468
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.468
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.372

Multiple sequence alignment