Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B6V88_RS03410 Genome accession   NZ_CP020615
Coordinates   736026..737543 (-) Length   505 a.a.
NCBI ID   WP_083011918.1    Uniprot ID   -
Organism   Legionella micdadei strain NZ2016     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 731026..742543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V88_RS03395 (B6V88_03395) - 731173..731754 (+) 582 WP_045100747.1 Maf family protein -
  B6V88_RS03400 (B6V88_03400) - 731869..734490 (-) 2622 WP_083011915.1 RasGEF domain-containing protein -
  B6V88_RS03405 (B6V88_03405) - 735120..735944 (+) 825 WP_083011916.1 hypothetical protein -
  B6V88_RS03410 (B6V88_03410) comM 736026..737543 (-) 1518 WP_083011918.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B6V88_RS03415 (B6V88_03415) - 737601..737870 (-) 270 WP_045099984.1 accessory factor UbiK family protein -
  B6V88_RS03420 (B6V88_03420) - 738107..738358 (-) 252 WP_045099983.1 hypothetical protein -
  B6V88_RS03425 (B6V88_03425) - 738498..739733 (+) 1236 WP_045099982.1 FAD-binding oxidoreductase -
  B6V88_RS03430 (B6V88_03430) - 739770..740108 (+) 339 WP_045099981.1 P-II family nitrogen regulator -
  B6V88_RS03435 (B6V88_03435) - 740196..740663 (-) 468 WP_045099980.1 EVE domain-containing protein -
  B6V88_RS03440 (B6V88_03440) - 740656..741240 (-) 585 WP_045099979.1 5-formyltetrahydrofolate cyclo-ligase -
  B6V88_RS03445 (B6V88_03445) - 741566..741754 (+) 189 WP_045099978.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55166.35 Da        Isoelectric Point: 7.4809

>NTDB_id=224982 B6V88_RS03410 WP_083011918.1 736026..737543(-) (comM) [Legionella micdadei strain NZ2016]
MNLAFSKTRSAVGIQAQPVSVEVHLSNGLPSFTIVGLAETAVKESKDRVRSAILNSQFDFPCRKITVNLAPADLPKSGSG
FDLPIAIGILAASGQISSQKLASHEFIGELALSGNLRGISAIIPVVLAAHRDKQLLVIAAANAEEASLAGQDGVYVANNL
REVCSYLCQDTPLQPLPPKPDAYHSGNELDWSDVKGQHHAKLALEIAACGGHSVLLCGPPGSGKTMLAKRFNTLLPQLTE
EEALECAAINSIHGRQLDFHKWRCPPFRSPHHTASPVALVGGGNPPKPGDISLAHHGVLFLDELPEFHRHVLETLREPLE
SGHICISRAAVQTEFPAKFQLIAAMNPCPCGQWGNPQADCLCTPERINRYLAKLSAPLLDRIDMQINVQALPQSELIKPH
EHGGTQSDEIRQFVTKTRLIQLERQNCINAQLSVKDCERICELKDEERQFLSHALDRLKLSARAYHRLLKVARTIADMNG
LARVELSCLQQSLSFKQTIKQQSKE

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=224982 B6V88_RS03410 WP_083011918.1 736026..737543(-) (comM) [Legionella micdadei strain NZ2016]
ATGAATCTCGCATTTAGCAAAACGCGCTCTGCCGTCGGTATTCAGGCACAGCCCGTCTCAGTTGAAGTCCATTTATCAAA
CGGGTTACCCAGTTTTACTATCGTTGGACTGGCTGAAACCGCCGTAAAAGAAAGCAAGGATCGTGTACGCAGTGCAATCC
TAAATAGCCAGTTTGATTTTCCCTGCCGTAAAATCACGGTCAATTTAGCACCCGCCGATTTACCTAAGTCAGGCAGCGGC
TTCGATTTGCCTATAGCCATTGGTATTCTTGCCGCCTCTGGACAAATTTCTTCACAAAAACTCGCTTCACATGAATTTAT
TGGCGAGCTGGCATTAAGCGGTAATCTACGAGGCATATCAGCAATCATCCCCGTGGTTCTTGCTGCCCATCGGGATAAAC
AATTATTGGTCATCGCCGCGGCTAATGCAGAAGAAGCTTCTCTTGCCGGGCAGGACGGTGTCTATGTTGCCAATAATCTT
CGCGAGGTCTGTAGTTATTTATGCCAGGATACGCCATTGCAACCCCTACCCCCCAAGCCAGATGCTTATCATTCTGGGAA
TGAATTGGATTGGTCCGATGTTAAGGGGCAACATCATGCTAAATTAGCCTTAGAAATAGCTGCCTGTGGGGGTCATAGCG
TTTTATTATGCGGCCCCCCAGGCAGTGGTAAGACTATGCTAGCTAAACGTTTCAATACGCTATTACCCCAATTGACCGAA
GAGGAGGCTCTGGAATGTGCAGCGATAAATTCAATTCATGGACGGCAACTTGATTTCCACAAATGGCGTTGCCCTCCTTT
CCGCTCACCACATCACACTGCGTCACCCGTTGCGCTTGTGGGTGGCGGTAACCCCCCTAAACCCGGTGACATTTCCCTCG
CCCATCACGGTGTTTTATTTCTCGATGAACTACCTGAGTTCCATAGGCATGTTCTAGAAACCCTTCGCGAGCCCTTAGAA
TCAGGCCATATTTGCATCTCCAGAGCTGCAGTGCAGACGGAGTTTCCGGCAAAATTCCAACTTATCGCAGCCATGAATCC
TTGCCCTTGCGGTCAGTGGGGGAATCCTCAAGCCGACTGCTTATGTACACCTGAGCGAATTAACCGTTATTTGGCAAAAT
TATCTGCCCCTTTACTGGATAGAATCGATATGCAAATCAATGTTCAAGCGCTTCCTCAATCGGAGTTGATTAAGCCTCAC
GAACATGGAGGGACACAAAGTGATGAGATAAGGCAATTCGTTACAAAAACTCGGTTAATACAACTGGAACGCCAAAACTG
CATCAATGCTCAATTAAGTGTGAAGGATTGTGAGCGTATTTGCGAATTAAAAGACGAAGAACGACAATTTCTAAGCCATG
CACTAGATCGCCTTAAATTATCAGCTCGCGCCTATCACCGCCTTCTTAAAGTAGCGAGAACTATTGCAGATATGAATGGA
TTAGCACGAGTAGAACTTAGTTGCTTACAACAGTCACTATCGTTTAAGCAGACGATTAAGCAGCAAAGTAAAGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

74.549

98.812

0.737
  comM Legionella pneumophila strain ERS1305867

74.549

98.812

0.737
  comM Haemophilus influenzae Rd KW20

51.786

99.802

0.517
  comM Vibrio cholerae strain A1552

51.411

98.218

0.505
  comM Vibrio campbellii strain DS40M4

50.803

98.614

0.501
  comM Glaesserella parasuis strain SC1401

50.2

99.01

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.522

97.822

0.426

Multiple sequence alignment