Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B6N58_RS12975 Genome accession   NZ_CP020614
Coordinates   2915711..2916181 (+) Length   156 a.a.
NCBI ID   WP_045098335.1    Uniprot ID   A0A098GEA4
Organism   Legionella micdadei strain NZ2015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2910711..2921181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6N58_RS14900 - 2911180..2911539 (+) 360 WP_216637144.1 amidohydrolase family protein -
  B6N58_RS14905 - 2911536..2912402 (+) 867 WP_216637145.1 amidohydrolase family protein -
  B6N58_RS12960 (B6N58_12960) hutG 2912409..2913194 (+) 786 WP_045098338.1 N-formylglutamate deformylase -
  B6N58_RS12965 (B6N58_12965) fabL 2913252..2914007 (-) 756 WP_045098337.1 enoyl-[acyl-carrier-protein] reductase FabL -
  B6N58_RS12970 (B6N58_12970) - 2914293..2915603 (+) 1311 WP_231852274.1 MFS transporter -
  B6N58_RS12975 (B6N58_12975) ssb 2915711..2916181 (+) 471 WP_045098335.1 single-stranded DNA-binding protein Machinery gene
  B6N58_RS12980 (B6N58_12980) - 2916250..2916939 (-) 690 WP_045098334.1 hypothetical protein -
  B6N58_RS12985 (B6N58_12985) rplQ 2917110..2917496 (-) 387 WP_045098333.1 50S ribosomal protein L17 -
  B6N58_RS12990 (B6N58_12990) rpoA 2917514..2918506 (-) 993 WP_045098332.1 DNA-directed RNA polymerase subunit alpha -
  B6N58_RS12995 (B6N58_12995) rpsD 2918525..2919145 (-) 621 WP_045098331.1 30S ribosomal protein S4 -
  B6N58_RS13000 (B6N58_13000) rpsK 2919163..2919561 (-) 399 WP_045098330.1 30S ribosomal protein S11 -
  B6N58_RS13005 (B6N58_13005) rpsM 2919582..2919935 (-) 354 WP_045098329.1 30S ribosomal protein S13 -
  B6N58_RS13010 (B6N58_13010) rpmJ 2920015..2920128 (-) 114 WP_074454232.1 50S ribosomal protein L36 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17562.49 Da        Isoelectric Point: 5.0106

>NTDB_id=224971 B6N58_RS12975 WP_045098335.1 2915711..2916181(+) (ssb) [Legionella micdadei strain NZ2015]
MARGINKVILVGNVGVDPDVRYMPNGNAVTTLSVATSETWKDKQTGEKQERTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKTGGSVNYEDMPSSPQTQHQPNSRKPQAALSPQDAFDELDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=224971 B6N58_RS12975 WP_045098335.1 2915711..2916181(+) (ssb) [Legionella micdadei strain NZ2015]
ATGGCTCGTGGGATCAATAAAGTTATCTTGGTAGGAAATGTCGGCGTTGACCCAGATGTAAGATATATGCCGAATGGCAA
CGCGGTAACCACCTTATCAGTAGCTACTAGTGAAACATGGAAGGATAAGCAAACTGGAGAAAAACAAGAGCGTACTGAAT
GGCATCGTGTGGTCTGTTTCAATCGGTTAGGCGAAATTGCCGGCGAATACATCCGCAAAGGTTCAAAATTGTATGTTGAA
GGCAGTCTGCGTACTCGTAAATGGCAAGATCAACAGGGGCAAGATCGTTATACAACTGAAATTGTTGCGTCTGATATCCA
AATGCTGGACAGCAAAACTGGTGGTTCCGTTAATTATGAAGATATGCCTTCTTCACCTCAAACACAACACCAACCAAATT
CCCGTAAACCACAAGCAGCTCTTTCACCACAAGACGCTTTTGATGAATTGGATGATGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098GEA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.685

100

0.59
  ssb Vibrio cholerae strain A1552

49.143

100

0.551
  ssb Neisseria meningitidis MC58

41.477

100

0.468
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.468
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.372

Multiple sequence alignment