Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   B7L46_RS07330 Genome accession   NZ_CP020597
Coordinates   1323231..1323971 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain HWBA8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318231..1328971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L46_RS07310 (B7L46_07315) aroB 1318773..1319855 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  B7L46_RS07315 (B7L46_07320) aroK 1319884..1320453 (-) 570 WP_000643712.1 shikimate kinase AroK -
  B7L46_RS07320 (B7L46_07325) pilQ 1320465..1322630 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  B7L46_RS07325 (B7L46_07330) pilP 1322693..1323220 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  B7L46_RS07330 (B7L46_07335) pilO 1323231..1323971 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  B7L46_RS07335 (B7L46_07340) pilN 1323968..1324609 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  B7L46_RS07340 (B7L46_07345) pilM 1324609..1325667 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  B7L46_RS07345 (B7L46_07350) ponA 1325829..1328384 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=224788 B7L46_RS07330 WP_000076101.1 1323231..1323971(-) (pilO) [Acinetobacter baumannii strain HWBA8]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=224788 B7L46_RS07330 WP_000076101.1 1323231..1323971(-) (pilO) [Acinetobacter baumannii strain HWBA8]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment