Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   B7L46_RS07325 Genome accession   NZ_CP020597
Coordinates   1322693..1323220 (-) Length   175 a.a.
NCBI ID   WP_000695061.1    Uniprot ID   A0A506J6X2
Organism   Acinetobacter baumannii strain HWBA8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1317693..1328220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L46_RS07305 (B7L46_07310) - 1317882..1318757 (-) 876 WP_000218808.1 hypothetical protein -
  B7L46_RS07310 (B7L46_07315) aroB 1318773..1319855 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  B7L46_RS07315 (B7L46_07320) aroK 1319884..1320453 (-) 570 WP_000643712.1 shikimate kinase AroK -
  B7L46_RS07320 (B7L46_07325) pilQ 1320465..1322630 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  B7L46_RS07325 (B7L46_07330) pilP 1322693..1323220 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  B7L46_RS07330 (B7L46_07335) pilO 1323231..1323971 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  B7L46_RS07335 (B7L46_07340) pilN 1323968..1324609 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  B7L46_RS07340 (B7L46_07345) pilM 1324609..1325667 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19445.72 Da        Isoelectric Point: 8.9898

>NTDB_id=224787 B7L46_RS07325 WP_000695061.1 1322693..1323220(-) (pilP) [Acinetobacter baumannii strain HWBA8]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIIHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=224787 B7L46_RS07325 WP_000695061.1 1322693..1323220(-) (pilP) [Acinetobacter baumannii strain HWBA8]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTATCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A506J6X2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989

  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714


Multiple sequence alignment