Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   B7L46_RS07335 Genome accession   NZ_CP020597
Coordinates   1323968..1324609 (-) Length   213 a.a.
NCBI ID   WP_000201221.1    Uniprot ID   A0A5P1AXR1
Organism   Acinetobacter baumannii strain HWBA8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318968..1329609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L46_RS07315 (B7L46_07320) aroK 1319884..1320453 (-) 570 WP_000643712.1 shikimate kinase AroK -
  B7L46_RS07320 (B7L46_07325) pilQ 1320465..1322630 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  B7L46_RS07325 (B7L46_07330) pilP 1322693..1323220 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  B7L46_RS07330 (B7L46_07335) pilO 1323231..1323971 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  B7L46_RS07335 (B7L46_07340) pilN 1323968..1324609 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  B7L46_RS07340 (B7L46_07345) pilM 1324609..1325667 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  B7L46_RS07345 (B7L46_07350) ponA 1325829..1328384 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  B7L46_RS07350 (B7L46_07355) - 1328402..1329226 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  B7L46_RS07355 (B7L46_07360) - 1329229..1329561 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24023.34 Da        Isoelectric Point: 5.3968

>NTDB_id=224789 B7L46_RS07335 WP_000201221.1 1323968..1324609(-) (pilN) [Acinetobacter baumannii strain HWBA8]
MATINLLPWREELREQRKKQFITFCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=224789 B7L46_RS07335 WP_000201221.1 1323968..1324609(-) (pilN) [Acinetobacter baumannii strain HWBA8]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTTTGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1AXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

73.077

97.653

0.714

Multiple sequence alignment