Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   GBS_RS05490 Genome accession   NC_004368
Coordinates   1063403..1064083 (-) Length   226 a.a.
NCBI ID   WP_000590620.1    Uniprot ID   A0AAV3JNX7
Organism   Streptococcus agalactiae NEM316     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1058403..1069083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS05455 (gbs1011) - 1058478..1058705 (-) 228 WP_000368981.1 hypothetical protein -
  GBS_RS05460 (gbs1014) - 1058921..1059250 (-) 330 WP_000806219.1 hypothetical protein -
  GBS_RS05465 (gbs1015) - 1059261..1059755 (-) 495 WP_000620669.1 hypothetical protein -
  GBS_RS05470 (gbs1016) - 1059792..1059980 (-) 189 WP_001161739.1 hypothetical protein -
  GBS_RS05475 (gbs1017) ffh 1060102..1061667 (-) 1566 WP_000863589.1 signal recognition particle protein -
  GBS_RS05480 (gbs1018) - 1061685..1062017 (-) 333 WP_000402075.1 putative DNA-binding protein -
  GBS_RS05485 (gbs1019) ciaH 1062106..1063419 (-) 1314 WP_000042576.1 cell wall metabolism sensor histidine kinase WalK Regulator
  GBS_RS05490 (gbs1020) ciaR 1063403..1064083 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  GBS_RS05495 (gbs1021) - 1064245..1066794 (-) 2550 WP_000859383.1 M1 family metallopeptidase -
  GBS_RS05500 (gbs1022) phoU 1066940..1067593 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  GBS_RS05505 (gbs1023) pstB 1067627..1068385 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25852.63 Da        Isoelectric Point: 4.2507

>NTDB_id=22468 GBS_RS05490 WP_000590620.1 1063403..1064083(-) (ciaR) [Streptococcus agalactiae NEM316]
MIKILLIEDDLSLSNSVFDFLDDFADVMQIFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGITTPVLIMTA
KESIDDKGQGFDLGADDYLTKPFYLEELKMRIQALLKRSGKFNDNSLIYGDIRVDMSTNSTFVNQTEVELLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKVRKKLKGTLFSENLQTLRSVGYILKHVETD

Nucleotide


Download         Length: 681 bp        

>NTDB_id=22468 GBS_RS05490 WP_000590620.1 1063403..1064083(-) (ciaR) [Streptococcus agalactiae NEM316]
ATGATAAAAATTTTATTAATTGAAGATGACTTGAGTCTTTCCAATTCCGTTTTTGATTTCCTTGATGACTTTGCCGATGT
CATGCAAATTTTTGATGGAGAAGAGGGTCTTTACGAAGCCGAAAGTGGAGTCTATGATCTGATTCTTCTAGATCTCATGT
TACCTGAAAAAAACGGCTTCCAAGTGTTGAAAGAGCTACGTGAAAAAGGTATTACAACCCCTGTATTAATAATGACCGCT
AAAGAAAGCATTGATGATAAGGGACAAGGTTTCGACTTAGGTGCTGATGATTATCTAACAAAACCTTTTTACCTAGAAGA
ACTAAAAATGCGAATTCAGGCTCTTTTAAAGCGTTCTGGAAAATTTAATGATAACAGCCTAATTTATGGTGATATTCGCG
TAGACATGTCTACTAACTCAACCTTTGTTAATCAAACAGAAGTTGAGCTCTTAGGTAAAGAGTTTGATCTTTTAGTCTAT
TTCCTTCAAAATCAAAATGTTATCTTACCGAAATCTCAAATCTTTGATCGTATTTGGGGATTTGATAGTGATACAACGAT
TTCAGTTGTAGAAGTCTATGTCTCTAAGGTTCGGAAAAAATTAAAAGGAACACTTTTTTCAGAAAACCTTCAAACTTTGC
GTAGTGTAGGATATATTTTAAAGCATGTCGAAACCGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae TIGR4

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae D39

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae R6

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae Rx1

88.393

99.115

0.876
  ciaR Streptococcus mutans UA159

88.688

97.788

0.867
  vicR Streptococcus mutans UA159

35.193

100

0.363
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.607

99.115

0.363

Multiple sequence alignment