Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B7D75_RS27385 Genome accession   NZ_CP020560
Coordinates   5785063..5786556 (+) Length   497 a.a.
NCBI ID   WP_107114595.1    Uniprot ID   -
Organism   Pseudomonas paraeruginosa strain Cr1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5780063..5791556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7D75_RS27355 (B7D75_27370) - 5780115..5781500 (+) 1386 WP_107114594.1 PLP-dependent aminotransferase family protein -
  B7D75_RS27360 (B7D75_27375) sutA 5781564..5781881 (-) 318 WP_003156037.1 transcriptional regulator SutA -
  B7D75_RS27365 (B7D75_27380) - 5781959..5782384 (-) 426 WP_003156034.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  B7D75_RS27370 (B7D75_27385) - 5782612..5783940 (-) 1329 WP_012077884.1 ammonium transporter -
  B7D75_RS27375 (B7D75_27390) glnK 5783981..5784319 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  B7D75_RS27380 (B7D75_27395) - 5784759..5785019 (+) 261 WP_012077885.1 accessory factor UbiK family protein -
  B7D75_RS27385 (B7D75_27400) comM 5785063..5786556 (+) 1494 WP_107114595.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B7D75_RS27390 (B7D75_27405) betT 5786682..5788667 (+) 1986 WP_012077913.1 choline BCCT transporter BetT -
  B7D75_RS30135 - 5789757..5789930 (-) 174 WP_204101220.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53155.97 Da        Isoelectric Point: 8.0968

>NTDB_id=224139 B7D75_RS27385 WP_107114595.1 5785063..5786556(+) (comM) [Pseudomonas paraeruginosa strain Cr1]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILSASGQLPGAALAGLECLGELALSGAIRPVRGVLPAAMAARDARRVLVVPKENAEEASLASGLTVYAVEHL
LEIAGHLSGQSPLSPYQARGLLREPCPYPDLAEVQGQATAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPTLGE
DEALEVAAIHSVASHVPLSHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLERIDLHVSVLRESTSLQPGRGE
TTTREVSERVSAARQRQLARQGCANAHLDLLGMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLDERQHI
ERQHLAEALQYRPSASG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=224139 B7D75_RS27385 WP_107114595.1 5785063..5786556(+) (comM) [Pseudomonas paraeruginosa strain Cr1]
ATGTCCCTGGCGATTGTCCATAGCCGAGCCCAGGTCGGCGTCGAAGCACCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCCTCGCTGACCCTGGTCGGCCTGCCGGAGACCGCGGTACGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAACGCCGGCTTCGACTTTCCCGCCCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTCGGCATCCTCTCCGCCAGCGGCCAGTTGCCCGGCGCCGCCCTCGCTGGCCTGGAGTGCCT
TGGCGAGCTGGCCCTGTCCGGCGCGATCCGACCGGTACGGGGCGTATTGCCGGCCGCGATGGCGGCGCGCGACGCAAGAC
GAGTTCTGGTGGTGCCGAAGGAAAATGCCGAAGAAGCCAGCCTGGCCAGCGGCCTGACGGTGTACGCGGTCGAGCACCTG
CTGGAGATCGCCGGGCACCTCTCCGGCCAGTCGCCGCTGTCGCCCTACCAGGCGCGCGGGCTGCTCCGCGAACCGTGCCC
CTATCCCGACCTGGCCGAGGTACAGGGCCAGGCAACGGCCAAGCGCGCCCTGCTGGTTGCCGCCGCCGGCGCGCACAACC
TCCTGTTCAGCGGCCCGCCGGGCACCGGCAAGACGCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGACGCTCGGCGAG
GACGAGGCGCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCGCTCAGCCACTGGCCGCAGCGGCCGTTCCG
CCAGCCACACCACTCCGCCTCGGCACCGGCGCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTGCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATCGCCCGAGCCAACGGCCGGGTGCGCTTTCCCGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAGCAGGTCCAGCGCTATCGCGGCAAGCTCT
CCGGACCGCTGCTCGAGCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCGGGCCGCGGCGAA
ACCACCACCCGCGAGGTCAGCGAGCGGGTCAGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGTGCCAACGCCCA
CCTCGACCTGCTGGGCATGCACCGCAACTGTGCGCTCGCCGAAGCGGACCGTCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTAGCCCGGACGCTGGCCGATCTGGACGAAAGGCAGCACATC
GAGCGCCAGCACCTCGCGGAAGCCCTGCAATACCGGCCGTCAGCGTCAGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Haemophilus influenzae Rd KW20

55.378

100

0.559
  comM Glaesserella parasuis strain SC1401

54.4

100

0.547
  comM Legionella pneumophila str. Paris

48.387

99.799

0.483
  comM Legionella pneumophila strain ERS1305867

48.387

99.799

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.463

Multiple sequence alignment