Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B5S57_RS18825 Genome accession   NZ_CP020534
Coordinates   2848566..2849099 (-) Length   177 a.a.
NCBI ID   WP_013857892.1    Uniprot ID   A0AAW8GW50
Organism   Vibrio anguillarum strain 425     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2843566..2854099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S57_RS18805 (B5S57_18670) - 2844036..2844362 (-) 327 Protein_2550 MSHA biogenesis protein MshK -
  B5S57_RS18810 (B5S57_18675) gspM 2844352..2844996 (-) 645 WP_013857889.1 type II secretion system protein GspM -
  B5S57_RS18815 (B5S57_18680) - 2844993..2846435 (-) 1443 WP_013857890.1 hypothetical protein -
  B5S57_RS18820 (B5S57_18685) csrD 2846448..2848436 (-) 1989 WP_029189909.1 RNase E specificity factor CsrD -
  B5S57_RS18825 (B5S57_18690) ssb 2848566..2849099 (-) 534 WP_013857892.1 single-stranded DNA-binding protein Machinery gene
  B5S57_RS18830 (B5S57_18695) qstR 2849385..2850032 (+) 648 WP_026027842.1 LuxR C-terminal-related transcriptional regulator Regulator
  B5S57_RS18835 (B5S57_18700) galU 2850150..2851019 (+) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  B5S57_RS18840 (B5S57_18705) uvrA 2851188..2854010 (+) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19459.61 Da        Isoelectric Point: 5.2257

>NTDB_id=223974 B5S57_RS18825 WP_013857892.1 2848566..2849099(-) (ssb) [Vibrio anguillarum strain 425]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQSAPQQA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=223974 B5S57_RS18825 WP_013857892.1 2848566..2849099(-) (ssb) [Vibrio anguillarum strain 425]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGTGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGGTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAGTCAGCTCCTCAACAGGCT
CAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

84.916

100

0.859
  ssb Glaesserella parasuis strain SC1401

54.974

100

0.593
  ssb Neisseria meningitidis MC58

43.889

100

0.446
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.446

Multiple sequence alignment