Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SO_RS01670 Genome accession   NC_004347
Coordinates   355703..357229 (-) Length   508 a.a.
NCBI ID   WP_011070714.1    Uniprot ID   Q8EJV7
Organism   Shewanella oneidensis MR-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 350703..362229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO_RS01650 (SO_0345) prpB 351590..352468 (-) 879 WP_011070710.1 methylisocitrate lyase -
  SO_RS01655 (SO_0346) - 352532..353296 (-) 765 WP_011070711.1 GntR family transcriptional regulator -
  SO_RS01660 (SO_0347) - 353751..354692 (-) 942 WP_011070712.1 acyltransferase -
  SO_RS01665 (SO_0348) - 354700..355602 (-) 903 WP_011070713.1 acyltransferase -
  SO_RS01670 (SO_0349) comM 355703..357229 (-) 1527 WP_011070714.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SO_RS01675 (SO_0350) - 357446..358561 (+) 1116 WP_011070715.1 DUF1963 domain-containing protein -
  SO_RS01680 (SO_0351) - 358578..359174 (-) 597 WP_011070716.1 response regulator transcription factor -
  SO_RS01685 (SO_0352) - 359174..360253 (-) 1080 WP_011070717.1 sensor histidine kinase -
  SO_RS01690 (SO_0353) - 360341..361039 (-) 699 WP_011070718.1 tetratricopeptide repeat protein -
  SO_RS01695 (SO_0354) - 361225..362175 (-) 951 WP_011070719.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55286.77 Da        Isoelectric Point: 7.9687

>NTDB_id=22390 SO_RS01670 WP_011070714.1 355703..357229(-) (comM) [Shewanella oneidensis MR-1]
MAIACVHTRASCGVEAPEVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPATSLKDTEFVGELALSGQIRYCQGLLPAIIAAKRQNNQLILPLENRHDAELVGYPKVYFGSHL
QSLAAFLHGQAPLPMLEQQLEWISNEPVESTPCLSEVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGINIKPQDFLKRPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDGPNRATPDQIQRYLARLSGPFIDRFDLTIEVPKLPAGTLTQQS
AQGETSHQIAKRVKCARDIQLARAGVLNSELSGKQLKQFSGLTDTDLSFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDKLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=22390 SO_RS01670 WP_011070714.1 355703..357229(-) (comM) [Shewanella oneidensis MR-1]
ATGGCGATAGCCTGCGTGCATACCCGAGCCAGTTGTGGTGTTGAAGCGCCCGAAGTCACGGTTGAAGTCCATCTCAGTAA
TGGCCTGCCGGCTTTTAATCTGGTGGGTTTGCCAGAAGCTTCAGTTAAAGAAGCCCGCGAGCGGGTGCGCAGCGCCTTGA
TCAATGCAGGATTCGAGTTTCCGATGCGGCGAATAACCGTCAACCTCGCCCCTGCGGATTTACCCAAGCAAGGTGGCCGT
TACGATTTACCTATCGCCATCGGCATTCTAGCCGCTTCAGAGCAAATCCCCGCCACGAGCCTTAAGGATACCGAATTTGT
TGGCGAACTTGCCCTCTCAGGGCAAATCCGCTACTGCCAAGGATTACTACCAGCAATCATTGCGGCTAAACGCCAAAATA
ATCAGTTAATTCTGCCGCTTGAGAATCGCCACGACGCTGAGTTAGTTGGTTACCCTAAGGTCTACTTTGGCTCCCATTTG
CAAAGTTTAGCGGCGTTTCTCCATGGACAAGCGCCACTCCCCATGCTGGAGCAGCAACTCGAGTGGATCTCGAATGAGCC
AGTGGAATCCACACCTTGCCTTAGCGAGGTGATAGGTCAATACCAAGCTAAACAAGCACTTGAGATCGCCGCCGCAGGCA
ACCATAACCTATTGATGCTAGGCCCACCCGGCACGGGGAAAACCATGTTAGCCAGCCGCATGATGGCACTATTACCTGCA
CTCAATTATGAAGAAGCCTTAGAAGTGGCTGCAATTCATTCCGTCGCGGGCATCAATATCAAACCGCAGGATTTTCTTAA
GCGGCCATTTCGTGCGCCGCACCATACTTGCTCCTCTATTTCCTTAGTCGGTGGCGGCAGCATTCCTAAGCCTGGCGAAA
TTTCGCTGGCCCATCGCGGAGTATTATTTTTGGATGAGGTTGCTGAATTTCCTCGTAAAGTGCTCGACTGTCTGCGTGAA
CCTATGGAGACAGGTGAAGTGGTGATCTCCCGCGCGGCGGCAAAACTGACCTTCTTAAGCCGCTTTCAATTGATCGCCGC
CATGAACCCCAGCCCGAGCGGCGATATCGACGGCCCCAATCGGGCAACGCCAGACCAAATCCAGCGCTATCTCGCCAGAC
TCTCTGGCCCGTTTATAGATAGATTTGATCTCACTATCGAAGTCCCTAAACTCCCCGCAGGCACCCTAACGCAACAGTCG
GCGCAAGGCGAAACCAGCCATCAAATCGCCAAACGAGTGAAATGCGCCCGCGATATTCAACTCGCCAGAGCTGGCGTACT
AAACAGTGAACTATCAGGCAAACAGCTTAAGCAATTTAGTGGCCTCACTGATACCGATCTGAGTTTTTTAGAACAAAGTG
TCGTCAAACTCGGGTTATCCGTGCGCAGCTTCCATCGTATTCAACGGGTCGCCCGCACCATTGCCGACCTTGAGCAGGCC
CCCAATACCGAAAGGCGTCACCTAGCCCAAGCCTTGGGATATCGGGCTATGGATAAATTATTGGCCCGTTTATCCCAACA
GTATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8EJV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.002

99.803

0.569
  comM Glaesserella parasuis strain SC1401

56.607

99.803

0.565
  comM Vibrio cholerae strain A1552

56.299

100

0.563
  comM Vibrio campbellii strain DS40M4

55.118

100

0.551
  comM Legionella pneumophila str. Paris

46.85

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.85

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.016

0.435

Multiple sequence alignment