Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AM681_RS24795 Genome accession   NZ_CP020503
Coordinates   5154726..5156249 (+) Length   507 a.a.
NCBI ID   WP_048232146.1    Uniprot ID   -
Organism   Serratia marcescens strain 95     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5149726..5161249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM681_RS24770 (AM681_24655) - 5149927..5150853 (-) 927 WP_033636413.1 branched-chain amino acid transaminase -
  AM681_RS24775 (AM681_24660) ilvM 5150877..5151134 (-) 258 WP_038874702.1 acetolactate synthase 2 small subunit -
  AM681_RS24780 (AM681_24665) ilvG 5151131..5152777 (-) 1647 WP_047729630.1 acetolactate synthase 2 catalytic subunit -
  AM681_RS24785 (AM681_24670) ilvL 5152920..5153018 (-) 99 WP_013814970.1 ilv operon leader peptide -
  AM681_RS24790 (AM681_24675) - 5153152..5154384 (-) 1233 WP_038874708.1 MFS transporter -
  AM681_RS24795 (AM681_24680) comM 5154726..5156249 (+) 1524 WP_048232146.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AM681_RS24800 (AM681_24685) - 5156278..5156616 (-) 339 WP_048232148.1 DUF413 domain-containing protein -
  AM681_RS24805 (AM681_24690) hdfR 5156736..5157563 (+) 828 WP_038874715.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54516.82 Da        Isoelectric Point: 8.5092

>NTDB_id=223816 AM681_RS24795 WP_048232146.1 5154726..5156249(+) (comM) [Serratia marcescens strain 95]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSADNAAEVGLIAQSRSHTARHL
LEVCAFLLGQGELPVAATPPSADTACDSADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
HEALESLAVASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRTSPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTQ
GESSELVRKRVQQARARQLERAGKVNALLSNREVERDCVLQTADAEFLETTLNALGLSVRAWQRILKVARTLADLAGDVE
LNRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=223816 AM681_RS24795 WP_048232146.1 5154726..5156249(+) (comM) [Serratia marcescens strain 95]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTGAAAGAGGCGCGCGATCGGGTACGCAGTGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCACGCTACGAGTTTCT
TGGCGAGCTTGCGCTGTCCGGCGCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GGCAACTAATCCTCTCGGCGGACAACGCCGCCGAGGTCGGCCTGATCGCACAGTCGCGCTCCCATACCGCCCGGCACCTG
CTGGAAGTCTGCGCCTTTCTGCTCGGCCAGGGCGAACTGCCGGTGGCGGCCACGCCTCCCTCTGCGGACACCGCCTGCGA
CAGCGCCGATCTGCGCGACATCATCGGTCAGGAACAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCCGGCACCGGTAAAACCATGTTGGCCAGCCGCCTCACAGGCCTGCTGCCGCCGCTCACGGAG
CATGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCCTGCAGCACCATATCCCCGCCGCCCTGCCATGGCGCCAGAGGCCGTT
TCGCGCACCGCATCACAGTGCATCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCCCGCCCCGGTGAGATCTCTATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTACCGGAATTCGAGCGTAAGGTACTCGATGCGCTACGTGAACCGCTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGTTGATCGCAGCAATGAACCC
CAGCCCGACCGGGCATTATCAGGGGTTGCACAATCGCACCTCACCGCAGCAGGTATTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTTTCTATCGAAGTGCCGCTGTTACCGCCGGGTACGCTCAGTCAGCGGAAAACGCAG
GGAGAAAGCAGTGAGCTGGTGCGAAAACGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGTGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGCGAAGTGGAACGTGATTGCGTTCTGCAGACGGCAGACGCCGAGTTTTTGGAGACGACATTAAACG
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTTGCGCGCACGTTGGCGGATTTGGCGGGGGATGTTGAG
CTCAACAGGCGCCATCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAGCTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

65.483

100

0.655
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

50.602

98.225

0.497
  comM Legionella pneumophila strain ERS1305867

50.602

98.225

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.452

Multiple sequence alignment