Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AM681_RS23110 Genome accession   NZ_CP020503
Coordinates   4792094..4792624 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain 95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4787094..4797624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM681_RS23095 (AM681_22980) - 4788199..4789230 (-) 1032 WP_001395480.1 IS630-like element ISEc33 family transposase -
  AM681_RS23100 (AM681_22985) - 4789370..4790617 (-) 1248 WP_048234831.1 site-specific integrase -
  AM681_RS23105 (AM681_22990) - 4790818..4792023 (+) 1206 WP_075335792.1 ISL3 family transposase -
  AM681_RS23110 (AM681_22995) ssb 4792094..4792624 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AM681_RS23120 (AM681_23000) uvrA 4792902..4795730 (+) 2829 WP_048234826.1 excinuclease ABC subunit UvrA -
  AM681_RS23125 (AM681_23005) - 4795960..4797012 (+) 1053 WP_048234824.1 NAD(P)-dependent alcohol dehydrogenase -
  AM681_RS23130 (AM681_23010) maa 4797034..4797591 (-) 558 WP_048234822.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=223814 AM681_RS23110 WP_004936793.1 4792094..4792624(-) (ssb) [Serratia marcescens strain 95]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=223814 AM681_RS23110 WP_004936793.1 4792094..4792624(-) (ssb) [Serratia marcescens strain 95]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment