Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AS657_RS21690 Genome accession   NZ_CP020501
Coordinates   4564986..4565516 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain BWH-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4559986..4570516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS657_RS21655 (AS657_21605) - 4560327..4560734 (-) 408 WP_025304432.1 VOC family protein -
  AS657_RS21660 (AS657_21610) - 4560782..4561450 (-) 669 WP_043139706.1 glutathione S-transferase family protein -
  AS657_RS21665 (AS657_21615) - 4561447..4561890 (-) 444 WP_148123781.1 lipocalin-like domain-containing protein -
  AS657_RS21670 (AS657_21620) bhsA 4562086..4562346 (+) 261 WP_025304435.1 multiple stress resistance protein BhsA -
  AS657_RS21675 (AS657_21625) - 4562496..4563245 (+) 750 WP_141999050.1 3-oxoacyl-ACP reductase family protein -
  AS657_RS21680 (AS657_21630) - 4563509..4563721 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  AS657_RS21685 (AS657_21635) - 4563943..4564899 (+) 957 WP_025304437.1 cyclase family protein -
  AS657_RS21690 (AS657_21640) ssb 4564986..4565516 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AS657_RS21700 (AS657_21645) uvrA 4565794..4568622 (+) 2829 WP_043139696.1 excinuclease ABC subunit UvrA -
  AS657_RS21705 (AS657_21650) - 4568850..4569902 (+) 1053 WP_043139692.1 NAD(P)-dependent alcohol dehydrogenase -
  AS657_RS21710 (AS657_21655) maa 4569934..4570491 (-) 558 WP_025304441.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=223791 AS657_RS21690 WP_004936793.1 4564986..4565516(-) (ssb) [Serratia marcescens strain BWH-23]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=223791 AS657_RS21690 WP_004936793.1 4564986..4565516(-) (ssb) [Serratia marcescens strain BWH-23]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCCCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment