Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RK85_RS12025 Genome accession   NZ_CP026070
Coordinates   2272336..2274015 (+) Length   559 a.a.
NCBI ID   WP_000942214.1    Uniprot ID   Q2FY50
Organism   Staphylococcus aureus strain FDAARGOS_27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2267336..2279015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK85_RS11995 (RK85_011995) - 2268189..2268551 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  RK85_RS12000 (RK85_012000) nusB 2268611..2269000 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  RK85_RS12005 (RK85_012005) xseA 2269017..2270354 (+) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  RK85_RS12010 (RK85_012010) - 2270347..2270577 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  RK85_RS12015 (RK85_012015) - 2270555..2271436 (+) 882 WP_000183378.1 polyprenyl synthetase family protein -
  RK85_RS12020 (RK85_012020) argR 2271868..2272320 (+) 453 WP_001124985.1 transcriptional regulator ArgR -
  RK85_RS12025 (RK85_012025) recN 2272336..2274015 (+) 1680 WP_000942214.1 DNA repair protein RecN Machinery gene
  RK85_RS12030 (RK85_012030) lpdA 2274166..2275587 (+) 1422 WP_001291535.1 dihydrolipoyl dehydrogenase -
  RK85_RS12035 (RK85_012035) - 2275603..2276595 (+) 993 WP_000568353.1 thiamine pyrophosphate-dependent enzyme -
  RK85_RS12040 (RK85_012040) - 2276595..2277578 (+) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  RK85_RS12045 (RK85_012045) - 2277591..2278865 (+) 1275 WP_000406843.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64321.91 Da        Isoelectric Point: 4.7013

>NTDB_id=223725 RK85_RS12025 WP_000942214.1 2272336..2274015(+) (recN) [Staphylococcus aureus strain FDAARGOS_27]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAYMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELISDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=223725 RK85_RS12025 WP_000942214.1 2272336..2274015(+) (recN) [Staphylococcus aureus strain FDAARGOS_27]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAATTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
ACAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCATATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTATATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATCTCTCACTTACCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTAGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FY50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442

Multiple sequence alignment