Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SJ2017_RS19360 Genome accession   NZ_CP020472
Coordinates   4533603..4535123 (+) Length   506 a.a.
NCBI ID   WP_080917014.1    Uniprot ID   -
Organism   Shewanella japonica strain KCTC 22435     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4528603..4540123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJ2017_RS19340 (SJ2017_3816) ilvY 4528873..4529745 (+) 873 Protein_3768 HTH-type transcriptional activator IlvY -
  SJ2017_RS19345 (SJ2017_3818) - 4529783..4530793 (-) 1011 WP_080917010.1 substrate-binding domain-containing protein -
  SJ2017_RS19350 (SJ2017_3819) - 4531162..4532409 (+) 1248 WP_080917011.1 YjgN family protein -
  SJ2017_RS19355 (SJ2017_3820) - 4532438..4533463 (+) 1026 WP_080917013.1 M48 family metallopeptidase -
  SJ2017_RS19360 (SJ2017_3821) comM 4533603..4535123 (+) 1521 WP_080917014.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SJ2017_RS19365 (SJ2017_3822) - 4535266..4536162 (+) 897 WP_055026156.1 acyltransferase -
  SJ2017_RS19370 (SJ2017_3823) - 4536167..4537099 (+) 933 WP_055026157.1 acyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55188.51 Da        Isoelectric Point: 7.7448

>NTDB_id=223573 SJ2017_RS19360 WP_080917014.1 4533603..4535123(+) (comM) [Shewanella japonica strain KCTC 22435]
MAIACVVTRACCGVEAPKVTVEVHLSNGLPAFNLVGLPETSVKEARERVRSALINAGFEFPMQRITVNLAPADLPKQGGR
YDLPIAIGILAASGQVPSDKLAHSEFIGELALSGEVRPCIGILPAIIAAKNQQHQLFIPLENRREAELVGFEQTHFVAHL
QHLAAFMHGQAQLPLVDQQPQWFEDEATGPQLCLSEVIGQYQAKQGLEIAAAGGHNTLFLGPPGTGKSMLANRIIPLLPK
LSYEEAIDVAAIHSVAGLNIKPNAFLERPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGILFLDEIAEFPRKVLDCLRE
PMESGEVVISRAAAKVKFSSRFQLIAAMNPSPCGDVDNARSTPDQIQRYLSKLSGPFLDRFDLTIEVPKLPAGTLTQPQQ
TAESSESIAKRVNQARQIQLSRAGLLNSELSPSLLKQHLNMNQADLEFLDASVQQLGLSVRSFHRIQRVARTIADLQQSK
TTERRHIAQALGYRAMDRLMHRLSQQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=223573 SJ2017_RS19360 WP_080917014.1 4533603..4535123(+) (comM) [Shewanella japonica strain KCTC 22435]
ATGGCGATTGCCTGCGTTGTCACACGTGCTTGCTGCGGCGTTGAAGCCCCTAAAGTCACAGTCGAAGTTCACCTAAGTAA
TGGATTACCTGCTTTTAATTTAGTCGGATTACCAGAAACCTCAGTAAAAGAAGCCCGTGAACGGGTTAGAAGTGCATTAA
TCAACGCCGGCTTTGAGTTTCCCATGCAGCGCATTACCGTTAATCTCGCTCCAGCCGACCTCCCCAAACAAGGAGGTCGA
TATGACTTGCCCATTGCAATCGGTATTTTAGCGGCTTCAGGCCAAGTGCCGTCGGATAAATTGGCTCACAGTGAATTTAT
TGGAGAGCTGGCGTTATCGGGAGAGGTTCGTCCATGTATTGGCATACTGCCAGCAATCATTGCAGCCAAAAACCAACAAC
ATCAATTATTTATCCCTTTAGAAAACAGACGAGAAGCAGAGTTAGTCGGCTTTGAGCAAACTCACTTTGTTGCCCATTTA
CAGCACCTTGCCGCCTTTATGCATGGTCAAGCTCAACTACCACTTGTTGACCAGCAACCGCAATGGTTTGAAGATGAAGC
AACAGGCCCGCAGTTATGCTTAAGCGAAGTCATAGGCCAATATCAGGCCAAGCAAGGGTTAGAAATCGCTGCAGCAGGTG
GGCACAATACTTTATTTTTAGGCCCTCCCGGCACCGGCAAAAGTATGCTCGCTAACCGAATCATTCCGCTATTGCCCAAG
CTCAGCTATGAAGAAGCTATTGATGTTGCCGCTATTCATTCTGTCGCAGGGTTAAACATCAAACCAAACGCTTTTCTTGA
ACGTCCCTTTAGAGCACCACACCACACATGCTCATCAATTTCATTAGTTGGCGGTGGCAGCATCCCAAAGCCAGGTGAGA
TATCACTAGCCCATAGAGGAATATTGTTTTTAGATGAAATAGCCGAGTTTCCACGTAAAGTATTAGATTGCCTACGTGAA
CCTATGGAGTCTGGCGAAGTCGTCATTTCTCGCGCAGCAGCAAAAGTAAAATTCTCGAGTCGTTTTCAACTGATTGCAGC
CATGAACCCAAGCCCTTGTGGCGATGTAGATAATGCCCGCTCAACCCCCGACCAAATTCAGCGTTATCTATCTAAACTTT
CAGGTCCATTTTTAGACCGTTTTGATTTAACAATCGAAGTCCCTAAACTGCCAGCAGGCACTCTCACCCAACCCCAGCAA
ACTGCTGAAAGCAGTGAAAGTATTGCCAAAAGGGTCAATCAAGCAAGACAGATACAGTTATCGCGCGCAGGTTTGCTTAA
CAGTGAACTGTCCCCTTCACTGTTAAAACAGCATTTAAACATGAACCAAGCTGACTTAGAGTTTTTAGACGCAAGTGTAC
AGCAGCTCGGTTTATCTGTGAGAAGCTTTCATCGGATCCAGCGGGTTGCTCGAACCATCGCAGACCTACAACAATCCAAA
ACAACTGAAAGACGCCATATTGCTCAAGCATTAGGATATCGAGCCATGGATAGGTTGATGCATCGATTGAGTCAGCAGTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.512

100

0.557
  comM Vibrio campbellii strain DS40M4

54.528

100

0.547
  comM Haemophilus influenzae Rd KW20

53.725

100

0.541
  comM Glaesserella parasuis strain SC1401

53.162

100

0.532
  comM Legionella pneumophila str. Paris

46.693

98.617

0.46
  comM Legionella pneumophila strain ERS1305867

46.693

98.617

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

99.407

0.427

Multiple sequence alignment