Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B6K69_RS03200 Genome accession   NZ_CP020470
Coordinates   669106..669657 (+) Length   183 a.a.
NCBI ID   WP_108642756.1    Uniprot ID   -
Organism   Fuscovulum blasticum strain 28/5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 664106..674657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6K69_RS03180 (B6K69_03175) - 665030..667112 (+) 2083 Protein_631 dipeptide ABC transporter ATP-binding protein -
  B6K69_RS03185 (B6K69_03180) - 667142..667615 (+) 474 WP_206340534.1 Lrp/AsnC family transcriptional regulator -
  B6K69_RS03190 (B6K69_03185) - 667615..668238 (+) 624 WP_108642755.1 LysE family translocator -
  B6K69_RS03195 (B6K69_03190) - 668243..668860 (-) 618 WP_164681870.1 lytic transglycosylase domain-containing protein -
  B6K69_RS03200 (B6K69_03195) ssb 669106..669657 (+) 552 WP_108642756.1 single-stranded DNA-binding protein Machinery gene
  B6K69_RS03205 (B6K69_03200) - 669701..670648 (+) 948 WP_108642757.1 acyltransferase family protein -
  B6K69_RS03210 (B6K69_03205) - 670759..671112 (+) 354 WP_107674569.1 SUF system Fe-S cluster assembly protein -
  B6K69_RS03215 (B6K69_03210) - 671236..671877 (+) 642 WP_123876523.1 hypothetical protein -
  B6K69_RS03220 (B6K69_03215) - 671885..672610 (+) 726 WP_108642759.1 DUF3307 domain-containing protein -
  B6K69_RS03225 (B6K69_03220) - 672634..672993 (+) 360 WP_107674560.1 HesB/IscA family protein -
  B6K69_RS03230 (B6K69_03225) tpiA 673143..673886 (+) 744 WP_108642760.1 triose-phosphate isomerase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18670.24 Da        Isoelectric Point: 5.3258

>NTDB_id=223547 B6K69_RS03200 WP_108642756.1 669106..669657(+) (ssb) [Fuscovulum blasticum strain 28/5]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVVNLRIATSETWRDRATGERKERTEWHSVAIFSEPLGKIAEQYLKKGSTVYI
EGSLETRKWQDQSGADRYSTEVVLRPFSGNLTLLGGRGDGGGASGGGDDRGYDDYGGGAGGGGYGGGQGGGGGSRGGSYG
GGQAGGGAGGGGGRSDMDDEIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=223547 B6K69_RS03200 WP_108642756.1 669106..669657(+) (ssb) [Fuscovulum blasticum strain 28/5]
ATGGCCGGCTCGGTCAACAAGGTCATCCTCATCGGCAATCTGGGCCGCGACCCCGAGGTGCGCAGCTTCCAGAACGGCGG
CAAGGTGGTGAACCTGCGCATCGCCACCAGCGAAACCTGGCGCGACCGCGCCACCGGCGAACGCAAGGAACGCACCGAAT
GGCATTCGGTCGCCATCTTCAGCGAACCGTTGGGCAAGATCGCCGAGCAGTATCTGAAAAAGGGCAGCACGGTCTATATC
GAGGGATCGCTGGAAACCCGCAAATGGCAAGACCAGTCGGGCGCTGACCGCTATTCGACCGAGGTCGTCCTGCGCCCCTT
CTCGGGCAACCTGACCCTGCTGGGCGGTCGCGGTGATGGCGGCGGGGCCAGCGGCGGCGGTGATGACCGCGGCTATGACG
ATTACGGCGGTGGCGCGGGCGGTGGCGGCTATGGCGGCGGCCAGGGTGGTGGCGGCGGTTCGCGCGGCGGCAGCTATGGC
GGCGGTCAGGCCGGCGGCGGTGCGGGCGGCGGCGGTGGCCGGTCCGACATGGATGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.721

97.814

0.486
  ssb Glaesserella parasuis strain SC1401

41.753

100

0.443
  ssb Neisseria gonorrhoeae MS11

40.217

100

0.404
  ssb Neisseria meningitidis MC58

38.919

100

0.393

Multiple sequence alignment