Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BV504_RS17660 Genome accession   NZ_CP020469
Coordinates   3947131..3948639 (+) Length   502 a.a.
NCBI ID   WP_078089460.1    Uniprot ID   A0AAD0I581
Organism   Halomonas sp. 'Soap Lake #6'     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3942131..3953639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV504_RS17645 (BV504_17675) - 3942630..3943610 (+) 981 WP_078090382.1 helix-turn-helix transcriptional regulator -
  BV504_RS17650 (BV504_17680) - 3943761..3945863 (+) 2103 WP_078089459.1 TonB-dependent siderophore receptor -
  BV504_RS17655 (BV504_17685) - 3946062..3947015 (+) 954 WP_226341420.1 ABC transporter substrate-binding protein -
  BV504_RS17660 (BV504_17690) comM 3947131..3948639 (+) 1509 WP_078089460.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BV504_RS17665 (BV504_17695) - 3948636..3949211 (-) 576 WP_078089461.1 NADPH-dependent FMN reductase -
  BV504_RS17670 (BV504_17700) - 3949247..3950227 (-) 981 WP_078089462.1 alpha/beta hydrolase -
  BV504_RS17675 (BV504_17705) - 3950437..3952611 (+) 2175 WP_078089463.1 malate synthase G -
  BV504_RS17680 (BV504_17710) - 3952726..3953133 (+) 408 WP_078089464.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53389.68 Da        Isoelectric Point: 8.5115

>NTDB_id=223541 BV504_RS17660 WP_078089460.1 3947131..3948639(+) (comM) [Halomonas sp. 'Soap Lake #6']
MTLAIVATRAGVGLDAPAVHVEVHLANGLPGLTLVGLPETAVKESRERVRSALINAGFDFPNTKRITLNLAPADLPKEGG
RFDLPIALGILAASGQIPVDALEGMECAGELALDGKLRAVPGVLPFALATRRAKKALIIPRACANEAALAGDLPVLPADT
LWQVVAHLLGQEKIPPHQLSASVKSTAPVADLADVRGQHQARRALEVAAAGGHNLLLAGPPGTGKTMLASRLPGILPPLS
EDDALQVAAVRSVCGLPLEADWGKRPFRQPHHSASAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRHVLEVLRQPLE
TGTIHLARASHERRYPAQFQLVAAMNPCPCGHLGDPRQRCQCSASQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAQT
QGESSAAVRDRVMAARERQMVRGALNSQLSGKALEAACALNDEERTWLAGVLEKLKLSARAYHRVLRVALTLADLQGEPK
PSQPHFIEAIGYRQLDRLLKGA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=223541 BV504_RS17660 WP_078089460.1 3947131..3948639(+) (comM) [Halomonas sp. 'Soap Lake #6']
ATGACATTAGCGATTGTTGCCACACGCGCAGGTGTTGGCTTGGACGCACCGGCAGTACACGTAGAGGTTCATTTAGCCAA
TGGACTGCCGGGCCTGACGCTAGTGGGCCTGCCGGAAACCGCCGTAAAAGAGAGCCGCGAGCGGGTGCGCAGCGCGCTGA
TCAATGCTGGATTCGATTTCCCCAACACCAAACGCATCACCCTGAACCTTGCCCCTGCTGATTTACCCAAAGAGGGCGGC
CGCTTCGATTTACCTATTGCACTGGGTATTCTTGCCGCCTCAGGGCAAATTCCAGTTGATGCACTAGAAGGTATGGAGTG
CGCTGGTGAACTGGCGCTGGACGGTAAATTACGCGCAGTGCCCGGTGTATTACCCTTCGCCTTGGCCACACGACGAGCCA
AAAAAGCACTGATCATTCCTCGCGCCTGCGCCAATGAAGCGGCGCTTGCAGGCGATTTACCCGTGTTGCCCGCCGACACC
CTTTGGCAGGTGGTAGCACACCTGCTAGGCCAGGAGAAAATCCCACCCCATCAGCTGTCTGCTTCCGTCAAATCCACCGC
CCCCGTAGCAGATTTAGCCGATGTACGCGGTCAACACCAGGCTCGTCGCGCTCTGGAAGTAGCTGCTGCCGGTGGCCATA
ACTTATTGCTGGCCGGGCCACCTGGAACGGGTAAAACCATGCTCGCTAGCCGCTTACCGGGTATTCTGCCGCCACTTTCC
GAAGATGATGCGTTGCAGGTCGCCGCCGTGCGCTCCGTCTGTGGACTGCCCTTGGAAGCCGACTGGGGCAAGCGGCCCTT
TCGCCAGCCTCACCATAGCGCCAGCGCCGCCGCACTGGTGGGTGGTGGCTCGAAACCTAAGCCCGGCGAAATCTCGCTGG
CTCACCACGGCGTGCTGTTTTTAGACGAGCTACCGGAGTTTTCTCGTCATGTGTTGGAGGTGCTTCGGCAACCACTGGAA
ACAGGCACTATTCATTTAGCCCGCGCCAGCCATGAGCGCCGTTACCCAGCCCAGTTTCAGTTGGTAGCCGCCATGAACCC
CTGCCCCTGTGGCCACTTGGGCGACCCACGCCAGCGCTGTCAGTGCAGCGCCAGCCAAATTCAGCGCTACCAGGCACGGC
TTTCCGGCCCGCTGCTAGACCGTATCGATCTACAAGTGGAAGTACCTGCCCTACCACCAGAACAGCTTACCGCCCAAACC
CAAGGCGAATCATCCGCCGCTGTGCGTGACCGGGTAATGGCCGCCCGAGAGCGCCAAATGGTACGGGGAGCGCTAAATAG
CCAACTCAGCGGCAAAGCGCTGGAAGCCGCCTGCGCCCTCAATGATGAAGAGCGCACTTGGCTGGCGGGCGTGCTGGAAA
AGCTCAAGCTCTCAGCCCGCGCCTACCACCGCGTACTGCGCGTAGCGTTAACGCTTGCCGACCTACAGGGAGAGCCCAAG
CCCAGCCAACCACACTTTATCGAAGCCATCGGCTATCGGCAGTTGGATAGGCTTTTGAAAGGGGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.213

100

0.568
  comM Glaesserella parasuis strain SC1401

55.03

100

0.556
  comM Vibrio cholerae strain A1552

54.871

100

0.55
  comM Vibrio campbellii strain DS40M4

54.076

100

0.542
  comM Legionella pneumophila str. Paris

50.888

100

0.514
  comM Legionella pneumophila strain ERS1305867

50.888

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.082

99.004

0.466

Multiple sequence alignment