Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B6E78_RS11535 Genome accession   NZ_CP020466
Coordinates   2463154..2464671 (-) Length   505 a.a.
NCBI ID   WP_081167188.1    Uniprot ID   -
Organism   Edwardsiella ictaluri strain RUSVM-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2458154..2469671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6E78_RS11515 (B6E78_11510) rfaF 2458560..2459621 (-) 1062 WP_015869552.1 ADP-heptose--LPS heptosyltransferase RfaF -
  B6E78_RS11520 (B6E78_11515) rfaD 2459645..2460574 (-) 930 WP_081167183.1 ADP-glyceromanno-heptose 6-epimerase -
  B6E78_RS11525 (B6E78_11520) - 2460865..2462061 (+) 1197 WP_015869554.1 glycine C-acetyltransferase -
  B6E78_RS11530 (B6E78_11525) tdh 2462071..2463096 (+) 1026 WP_081167186.1 L-threonine 3-dehydrogenase -
  B6E78_RS11535 (B6E78_11530) comM 2463154..2464671 (-) 1518 WP_081167188.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B6E78_RS11540 (B6E78_11535) - 2464961..2466196 (+) 1236 WP_081167191.1 MFS transporter -
  B6E78_RS11545 (B6E78_11540) ilvL 2466324..2466422 (+) 99 WP_071525675.1 ilv operon leader peptide -
  B6E78_RS11550 (B6E78_11545) ilvG 2466560..2468209 (+) 1650 WP_081167193.1 acetolactate synthase 2 catalytic subunit -
  B6E78_RS11555 (B6E78_11550) ilvM 2468206..2468496 (+) 291 WP_015869559.1 acetolactate synthase 2 small subunit -
  B6E78_RS11560 (B6E78_11555) - 2468550..2469479 (+) 930 WP_015869560.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53599.86 Da        Isoelectric Point: 8.9931

>NTDB_id=223478 B6E78_RS11535 WP_081167188.1 2463154..2464671(-) (comM) [Edwardsiella ictaluri strain RUSVM-1]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAEDRVRCAMLNSGFQFPPKRTLNLAPADLPKEGGRY
DLPMALALLLASGQLAPHVSICNYEFIGELALSGDLRPVQGALPAALSAAHAKRTLIAPSDNAAELGLLAAPRPPIAPSL
LAVCAFLSGQASLEAAPAGEMTSGGTDTGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMTP
DEALEQAAISSLAYPGTMPPRYGVRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPLE
SGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAAAQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRAD
GEDSATLRRRVCAARVRQYARGGRLNAHLEGAARDRDCRLAPNDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCDN
IARRHLAEALSYRAMDRLLLTLQRG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=223478 B6E78_RS11535 WP_081167188.1 2463154..2464671(-) (comM) [Edwardsiella ictaluri strain RUSVM-1]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAGGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTGCCGGGCTTTACCCTGGTGGGTCTACCGGAAACGGCCGTACGCGAAGCCGAAGATCGGGTACGCTGTGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCACGTTGAACCTGGCACCCGCCGATCTGCCCAAAGAAGGGGGGCGTTAC
GATCTGCCGATGGCGCTGGCGTTGCTGCTGGCGTCCGGGCAGCTGGCCCCGCACGTATCCATTTGCAACTACGAGTTTAT
TGGAGAGTTGGCCCTGTCCGGCGATCTGCGCCCGGTCCAGGGGGCGCTACCCGCCGCGCTGAGCGCCGCCCACGCGAAGC
GTACCCTGATAGCGCCCAGTGATAACGCGGCTGAACTCGGGCTGCTGGCGGCCCCACGGCCCCCCATCGCGCCATCGCTG
CTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTGGAGGCCGCGCCGGCCGGCGAGATGACGAGCGGCGGTACAGA
CACCGGCGATATGGCCGACATTATCGGTCAGGCACAGGCACGACGGGCGCTGGAGATCGCCGCCGCCGGCGGACATAACC
TGCTGCTGATCGGTCCTCCGGGCACCGGTAAAACCATGCTGGCCTGCCGCCTGCCAGGCCTGCTGCCGCCGATGACCCCG
GATGAGGCACTGGAGCAGGCGGCCATCAGCAGTCTGGCCTACCCGGGCACCATGCCGCCGCGCTATGGCGTGCGCCCCTT
TCGCGCACCACATCACAGCGCCTCCATGGCCGCGTTGATCGGCGGGGGGCCGCTGCCGAAACCCGGCGAGATCTCGCTGG
CCCATCACGGTGTCCTGTTTCTTGACGAACTGGCCGAATTTGACCGGCGAACCCTGGACGCCTTGCGCGAACCGCTGGAG
TCCGGCGTCGTCCATCTGTCCCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGGGTACAGCTGGTGGCGGCCATGAATCC
CAGCAGCGGTGGCCACGCTGACGGGCGCGATCGCCGGGCGGCGGCGGCGCAGGTGCTAAGATACCTCTCCCGGCTGTCCG
GCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTTCCGCCGCTGTCACCGGGCCTGCTGGCCCGCCAACGGGCGGAT
GGCGAAGACAGTGCGACCCTACGCCGGCGGGTCTGCGCCGCCCGGGTGCGGCAGTATGCCCGCGGCGGCCGGCTCAATGC
GCATCTGGAGGGCGCCGCCCGCGATCGCGACTGCCGTCTGGCTCCGAACGATGCCCTCTATCTGGAGCAGGCGCTCACGC
GCCTGGCACTATCGGTACGCGCCTGGCACCGGCTGCTGAAAGTGGCGCGTACGCTGGCGGATCTGGAAGGATGCGATAAC
ATTGCACGCCGCCATCTGGCCGAGGCGCTGAGCTACCGCGCCATGGATCGGCTACTGCTCACCCTGCAAAGGGGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.853

99.604

0.576
  comM Haemophilus influenzae Rd KW20

56.89

100

0.572
  comM Vibrio campbellii strain DS40M4

56.461

99.604

0.562
  comM Glaesserella parasuis strain SC1401

54.99

100

0.556
  comM Legionella pneumophila str. Paris

46.293

98.812

0.457
  comM Legionella pneumophila strain ERS1305867

46.293

98.812

0.457
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.432

Multiple sequence alignment