Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B5D82_RS08740 Genome accession   NZ_CP020465
Coordinates   2065190..2066713 (-) Length   507 a.a.
NCBI ID   WP_081150854.1    Uniprot ID   A0A222G7F5
Organism   Cognaticolwellia beringensis strain NB097-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2060190..2071713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D82_RS08720 (B5D82_08725) - 2060360..2061793 (-) 1434 WP_081150846.1 OmpA family protein -
  B5D82_RS08725 (B5D82_08730) - 2062189..2062506 (-) 318 WP_081150848.1 pyrimidine/purine nucleoside phosphorylase -
  B5D82_RS08730 (B5D82_08735) ilvC 2062619..2064103 (-) 1485 WP_081150850.1 ketol-acid reductoisomerase -
  B5D82_RS08735 (B5D82_08740) ilvY 2064277..2065167 (+) 891 WP_081150852.1 HTH-type transcriptional activator IlvY -
  B5D82_RS08740 (B5D82_08745) comM 2065190..2066713 (-) 1524 WP_081150854.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B5D82_RS08745 (B5D82_08750) ilvG 2067236..2068900 (+) 1665 WP_081150856.1 acetolactate synthase 2 catalytic subunit -
  B5D82_RS08750 (B5D82_08755) ilvM 2068901..2069158 (+) 258 WP_081150858.1 acetolactate synthase 2 small subunit -
  B5D82_RS08755 (B5D82_08760) - 2069258..2070181 (+) 924 WP_081150860.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55573.98 Da        Isoelectric Point: 7.0631

>NTDB_id=223455 B5D82_RS08740 WP_081150854.1 2065190..2066713(-) (comM) [Cognaticolwellia beringensis strain NB097-1]
MTLACVFSRARVGLESPLVTVEVHLANGLPAFNIVGLPETSVREAKDRVRSAIINCGYEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAAAAQLPNADLNQYEFAGELALSGELRAIIGEIPMAMACKESGRTLVIPSENAEQASWVPQVKILSLSHL
NQLFPHFLKQQSLPLVQARVLQEYKTESINDIADVVGQPLAKRALELAASGGHNLLFIGPPGTGKTMLASRLPGILPPMT
EQEALSSAAIQSICHKNINPESWLTRPFRAPHHTASSAALVGGGSHPQPGEISLAHNGVLFLDELPEFERKVLDVLREPM
ESGEVTISRALIKQTFPAQFQLVAAMNPSPTGFYNDKRSTPEQVLRYLNRLSGPFLDRIDIQIEVTRLPRGMWANDEGKG
ESSSTIQKRVGLCHQKQILRQGKPNAQLGSAEVRTFCQLSADDNEFLELAIEKLNLSTRAHHKILKISRTLADMEAVEHI
EHKHLIEALSYRAMDRILRHLTDAISL

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=223455 B5D82_RS08740 WP_081150854.1 2065190..2066713(-) (comM) [Cognaticolwellia beringensis strain NB097-1]
ATGACCTTAGCCTGTGTTTTTAGTCGCGCTCGCGTCGGACTCGAATCGCCCTTAGTCACGGTAGAAGTGCATTTAGCCAA
TGGATTGCCTGCATTTAATATTGTCGGCTTACCTGAAACCTCCGTTCGGGAGGCAAAAGATCGCGTGCGCAGTGCTATTA
TCAATTGCGGTTATGAATTTCCAGCCAAACGCATCACGGTTAATTTAGCACCTGCTGATTTGCCAAAAGAAGGAGGCCGC
TTCGACCTCCCGATTGCCTTAGGTATTCTAGCCGCGGCTGCACAGCTTCCAAACGCAGACTTAAATCAGTATGAATTTGC
CGGTGAGTTAGCCTTGTCTGGTGAGCTACGCGCTATTATTGGTGAAATCCCTATGGCAATGGCTTGCAAAGAAAGTGGCC
GCACATTGGTAATACCGAGCGAAAATGCCGAACAAGCTAGCTGGGTACCGCAAGTAAAAATATTAAGCCTGTCACATTTA
AACCAGCTCTTTCCTCATTTTTTAAAACAACAAAGCTTGCCATTAGTTCAAGCAAGAGTCCTACAAGAATATAAAACTGA
GAGTATCAATGATATCGCCGATGTTGTCGGCCAACCTCTAGCCAAGCGTGCATTAGAACTTGCTGCAAGTGGCGGTCACA
ATTTATTGTTTATTGGCCCACCAGGTACAGGAAAAACCATGCTTGCCAGTAGATTACCTGGAATTTTACCCCCGATGACC
GAGCAAGAAGCCCTTTCGAGTGCCGCTATTCAATCTATTTGCCATAAAAATATCAATCCTGAGTCATGGTTAACTCGGCC
GTTTCGCGCCCCACATCATACCGCGTCGTCAGCTGCCTTAGTTGGTGGCGGTAGTCATCCTCAACCAGGTGAAATTTCTT
TAGCCCATAACGGTGTGCTTTTTCTCGACGAATTGCCTGAATTTGAGCGAAAAGTGCTCGACGTATTACGTGAACCCATG
GAGTCTGGTGAGGTAACCATTTCACGCGCACTAATCAAACAAACCTTTCCTGCACAGTTTCAATTGGTCGCCGCGATGAA
TCCTAGTCCAACAGGGTTTTACAATGACAAGCGCAGTACACCAGAGCAGGTTTTACGTTACCTCAACCGGCTTTCAGGAC
CATTTTTAGATCGAATTGATATTCAAATTGAAGTTACAAGGTTACCTCGAGGCATGTGGGCGAACGATGAAGGCAAAGGT
GAGTCAAGTAGTACGATTCAGAAACGGGTCGGTCTTTGTCACCAAAAACAAATTTTACGCCAAGGCAAACCTAACGCACA
GCTTGGCAGTGCTGAAGTAAGAACTTTCTGTCAACTCTCAGCTGATGATAACGAATTTTTAGAACTCGCCATTGAAAAAC
TAAATTTATCAACCAGAGCACATCATAAAATACTCAAAATTTCCAGAACACTCGCCGACATGGAGGCTGTAGAGCACATT
GAACACAAACACTTAATTGAAGCGTTATCGTATCGTGCTATGGATAGAATATTACGCCATTTGACTGACGCTATTTCATT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222G7F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.709

100

0.558
  comM Vibrio campbellii strain DS40M4

56.151

99.408

0.558
  comM Vibrio cholerae strain A1552

55.952

99.408

0.556
  comM Glaesserella parasuis strain SC1401

54.348

99.803

0.542
  comM Legionella pneumophila str. Paris

47.8

98.619

0.471
  comM Legionella pneumophila strain ERS1305867

47.8

98.619

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.759

100

0.458

Multiple sequence alignment