Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   A6J85_RS06010 Genome accession   NZ_CP020450
Coordinates   1199279..1201261 (+) Length   660 a.a.
NCBI ID   WP_082307409.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194279..1206261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS06000 (A6J85_05935) amiA3 1194811..1196769 (+) 1959 WP_082307408.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06005 (A6J85_05940) amiA 1197020..1199002 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06010 (A6J85_05945) amiA 1199279..1201261 (+) 1983 WP_082307409.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06015 (A6J85_05950) amiC 1201326..1202822 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  A6J85_RS06020 (A6J85_05955) amiD 1202822..1203748 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  A6J85_RS06025 (A6J85_05960) amiE 1203757..1204824 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  A6J85_RS06030 (A6J85_05965) amiF 1204835..1205758 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73040.53 Da        Isoelectric Point: 5.0848

>NTDB_id=223191 A6J85_RS06010 WP_082307409.1 1199279..1201261(+) (amiA) [Streptococcus gordonii strain FDAARGOS_257]
MKKGKILTLAGVALLATGVLAACSNSTSNSSSSGADQAFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNYGNL
VPSMAEDWTVSKDGLTYTYKLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTKDFS
SVGVKAVDDRTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQAADPTSLLYNGPFLLKSITSKSSIEFAKNPN
YWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSSSFLVGVNIDRQTYNH
TAKSSDAQKASTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYGDEW
KDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTASAKVQRVQSLKQSIESSLGTDNVVVDIHQMKT
DDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAADQVGLKEYAKLVDEAAAEK
TDVNKRYEKYAAAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQEKW
NKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=223191 A6J85_RS06010 WP_082307409.1 1199279..1201261(+) (amiA) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAGAAAGGTAAAATCCTTACACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAGCTCTGGCGCAGATCAAGCTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGAATTATTTGA
TCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATTGATGGTCTTTTGGAAAATGACAACTATGGAAACTTG
GTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATAAACTTCGTAAGGATGCTAAATG
GTATACTTCTGATGGTGAAGAATATGCTGATGTCAAGGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTGCTGACAACA
AGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAGGATTTCTCA
TCAGTTGGTGTTAAAGCAGTTGATGACCGCACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTTTGGAACTCTAAAAC
AACGATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGTGACAAGTTTGCTCAAGCTGCTGACCCAA
CTAGTCTTCTATACAACGGGCCATTCCTACTTAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAAAATCCAAAT
TATTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACGTACTTTGACGGGCAAGATCAAGGTAAACCAGCTGA
GCAATTTGCTAAAGGTGCTCTCAGTGCGGCTAGACTGGCTCCTACAAGTGCTACCTTCTCCAAAGTAGAAAAAGAATTCA
AAGATAATATCGTTTATACTCCTCAAGATTCTTCAAGCTTTTTAGTTGGGGTGAACATTGATCGTCAAACATACAATCAC
ACAGCTAAGTCAAGTGATGCACAAAAAGCATCAACAAAGAAAGCTTTGATGAACAAAGATTTCCGTCAAGCCTTGAGTTT
TGCATTCGACAGAACTGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATCTCTACATTC
CACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGTGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGAGATGAGTGG
AAAGATGTAAACTTCGACGATGCTCAAGATGGTCTTTACAATAAAGAAAAAGCTAAAGCTGAATTTGCGAAAGCTAAAAA
AGCTCTCCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTAGTGCTAAAGTTCAGC
GTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAAATGAAGACT
GATGATGTTTTGAACATCACATATTATGCTGCTTCAGCTGCTGAAGAAGACTGGGATATTTCTGATAATGTTGGTTGGTC
TCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAATACCAAGACATTCTTAGGCTTTG
ATGGTAAAGAAAATGCAGCTGCAGACCAAGTTGGTTTGAAGGAGTATGCTAAGCTAGTTGATGAAGCTGCCGCTGAAAAG
ACAGATGTAAATAAACGCTATGAAAAATATGCAGCTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGATACCAACAAC
AAGTAGAACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTAAAGGTCGTG
ACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAAGAAAAATGG
AATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.574

100

0.608
  amiA3 Streptococcus thermophilus LMD-9

59.668

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.215

100

0.594

Multiple sequence alignment