Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   A6J85_RS06000 Genome accession   NZ_CP020450
Coordinates   1194811..1196769 (+) Length   652 a.a.
NCBI ID   WP_082307408.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189811..1201769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS05990 (A6J85_05925) pbp3 1191103..1192341 (-) 1239 WP_082307406.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  A6J85_RS05995 (A6J85_05930) amiA 1192632..1194593 (+) 1962 WP_082307407.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06000 (A6J85_05935) amiA3 1194811..1196769 (+) 1959 WP_082307408.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06005 (A6J85_05940) amiA 1197020..1199002 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06010 (A6J85_05945) amiA 1199279..1201261 (+) 1983 WP_082307409.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72328.11 Da        Isoelectric Point: 5.0271

>NTDB_id=223189 A6J85_RS06000 WP_082307408.1 1194811..1196769(+) (amiA3) [Streptococcus gordonii strain FDAARGOS_257]
MNKKKRFVGVGLAVLSSVILAACSSTASNTKVYSYVYSNDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGNSFGSAKPSSILYNGPYILKSLTAKSSIEYKKNEKYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
QKSDTKAAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMILRNLAVPPTFVQIKDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNAEKAKTEFAKAKEALQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQDDVLTSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=223189 A6J85_RS06000 WP_082307408.1 1194811..1196769(+) (amiA3) [Streptococcus gordonii strain FDAARGOS_257]
ATGAATAAGAAAAAAAGATTTGTTGGAGTTGGACTTGCAGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
ATCTAATACAAAGGTGTATTCTTATGTATATAGTAATGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTGACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAATTTGATTCCGTCTCTTGCTGAA
GATTGGACCGTATCTAAGGATGGTTTGACCTATACTTACAAGCTTCGAAAAGATGCTAAGTGGTATACCTCAGATGGCGA
AGAGTATGCTGAGGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCCGATGGCAAATCTGAAGCTCTTTACC
TTGTTCAAAATTCTATCAAAGGATTGGATGCCTATATCAAAGGGGAAACTAAAGACTTTTCTACTGTAGGTGTAAAAGCA
CTGGATGATTATACAGTGCAGTATACTTTGAATAAGCCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATCTTATT
CCCGATAAATGCTGATTTCTTAGCTTCCCAAGGAAATAGTTTTGGCTCAGCTAAACCGTCTAGTATTTTGTACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAATCTTCTATTGAATATAAGAAAAACGAAAAATATTGGGATAAAGAAAATGTT
CCGATTGAAGATGTAAAACTATCTTATTATGATGGATCTGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCCTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCGAACTATGCTTCTGTTAAAAAGAAATATGCGGATAATATTACTTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGTCAGTCTTATAATCATACTTCTAAGAAAGATGACAAG
CAAAAATCAGATACCAAGGCTGCTATTTTAAACAAAGACTTCCGTCAGGCAATCGGTTTTGCCTTTGATAGAAAAGCTTA
CGCAGCTCAAACGAATGGCGAAGACGGAGCATCAATGATCTTGCGCAATCTTGCAGTGCCGCCGACATTTGTACAGATCA
AGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGCCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCCCAAGACGGTCTATATAATGCTGAAAAAGCTAAAACAGAGTTTGCAAAAGCTAAAGAAGCGCTGCAGGCTCAAGGTGT
GAATTTCCCAATTCATCTAGATTTGCCAGTGAGTCAGTCTGATAAGGCTGGAATTCAACAAGCTAGTTCCTTTAAACAGT
CTGTTGAGTCAGCTCTAGGAAAAGATAATGTAGTAGTTGATCTTCAGCAAATGTCTGAAGATGACTTTAATAATACGGGT
TATTTCGCCAACTCGGCTGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCTGATTATCAAGATCCTTCTAC
ATATTTAGATGTTTTTGATCCTACAAATGGTGGATTATTGCAAGCGATTGGAATTGAACCGGGTCAAAATCAAGATGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCAAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCATGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
GGTTCAAAAATCAGTTCCATTTACTAGAGCCTACTCTTGGATTGGAAGTAAGGGGACAGCTACAAATTATAAATACATGC
AACTTCAAGACGATGTCTTGACTTCTAAGGATTATGAGAAGGCATTTAAAACTTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.752

100

0.592
  amiA Streptococcus salivarius strain HSISS4

58.537

100

0.589
  amiA3 Streptococcus thermophilus LMG 18311

58.447

100

0.589

Multiple sequence alignment