Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   A6J85_RS05995 Genome accession   NZ_CP020450
Coordinates   1192632..1194593 (+) Length   653 a.a.
NCBI ID   WP_082307407.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187632..1199593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS05980 (A6J85_05915) sufU 1188828..1189265 (+) 438 WP_008809631.1 Fe-S cluster assembly sulfur transfer protein SufU -
  A6J85_RS05985 (A6J85_05920) sufB 1189283..1190695 (+) 1413 WP_008809630.1 Fe-S cluster assembly protein SufB -
  A6J85_RS05990 (A6J85_05925) pbp3 1191103..1192341 (-) 1239 WP_082307406.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  A6J85_RS05995 (A6J85_05930) amiA 1192632..1194593 (+) 1962 WP_082307407.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06000 (A6J85_05935) amiA3 1194811..1196769 (+) 1959 WP_082307408.1 peptide ABC transporter substrate-binding protein Regulator
  A6J85_RS06005 (A6J85_05940) amiA 1197020..1199002 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72739.99 Da        Isoelectric Point: 4.9252

>NTDB_id=223188 A6J85_RS05995 WP_082307407.1 1192632..1194593(+) (amiA) [Streptococcus gordonii strain FDAARGOS_257]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYLTDPDTLDYTNTNRSTTSDVIANLVDGLLENDKYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQNSIKGLDAYVKGESKDFSTVGVK
AIDDYTVQYTLNQPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDATTFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTVYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVEKDLVSYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKEALQAQGVEFPIHLDLPVEQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEDADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGSPLVMKAVPFTKPYSLVGIKGDVYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=223188 A6J85_RS05995 WP_082307407.1 1192632..1194593(+) (amiA) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACGCTTGCTTCTGTTTTTACCTTAGCAGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATGTCTATTTAACAGACCCAGATACCTTGGATTATACAAATACTAATCGTTCAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAAATACGGAAATCTTGTGCCATCTCTGGCA
GAAGATTGGACAGTATCGAAAGATGGTTTGACTTATACATATAAGCTTCGGAAGGGTGCTAAATGGTATACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCGCAAGACTTTGTTACTGGTTTGAAGCACGCAGCAGACAGCAATTCAGATGCGCTTC
CAATTGTTCAAAACTCTATCAAAGGTTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGATTGACGATTATACAGTACAATATACGCTCAATCAGCCAGAGAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACTGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCTAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACTTACTTTGATGGTTCTGATCAAGAAGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTACAAAAACAATACAAAGATAATATTGTATACT
CTCCTCAAGATGCAACGACATTCTTCTATGCCTTTAACTACAACCGTAAAGCCTACAATTTTACAGCCAAGACAACAGAT
GCTCAAAAGACATCTACAACAGCTGCTCTCTTAAATAAAGATTTCCGTCAGGCTATCAACTTTGCTTTCAATCGGACAGT
TTATGGAGCACAGCAAAACGGTCAAGAGGGAGCAACTAGCTCACTTAGAAATAGCTTAGTACCGCCAACATTCGTTCAGA
TTGGTGAAAAGAACTTCGGAGACATAGTTGAAAAAGATTTGGTGAGCTATGGTGATGAGTGGAAGGGTGTTAAGTTGGAC
GATGCTCAGGATGGACTCTTTAATGTTGAGAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGAAGCTCTCCAAGCACAAGG
TGTTGAATTCCCAATTCACTTAGATCTTCCTGTTGAACAAACAAACAACCTCTTGGTACAGCAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCTGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGATGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAACGGTGGTAGTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGTTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.577
  amiA3 Streptococcus thermophilus LMD-9

56.449

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

56.297

100

0.568

Multiple sequence alignment