Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PFL_RS30530 Genome accession   NC_004129
Coordinates   6840201..6841694 (+) Length   497 a.a.
NCBI ID   WP_011064193.1    Uniprot ID   A0A2C9EVM9
Organism   Pseudomonas protegens Pf-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6835201..6846694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL_RS30500 (PFL_6016) - 6835754..6836458 (+) 705 WP_011064189.1 HAD family hydrolase -
  PFL_RS30505 (PFL_6017) sutA 6836585..6836908 (-) 324 WP_007926654.1 transcriptional regulator SutA -
  PFL_RS30510 (PFL_6018) - 6837011..6837436 (-) 426 WP_011064190.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PFL_RS30515 (PFL_6019) - 6837647..6838984 (-) 1338 WP_011064191.1 ammonium transporter -
  PFL_RS30520 (PFL_6020) glnK 6839018..6839356 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PFL_RS30525 (PFL_6021) - 6839773..6840033 (+) 261 WP_011064192.1 accessory factor UbiK family protein -
  PFL_RS30530 (PFL_6022) comM 6840201..6841694 (+) 1494 WP_011064193.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PFL_RS30535 (PFL_6023) - 6841699..6842913 (-) 1215 WP_041774530.1 aldose 1-epimerase family protein -
  PFL_RS30540 (PFL_6024) - 6843026..6843604 (-) 579 WP_011064195.1 TetR/AcrR family transcriptional regulator -
  PFL_RS30545 (PFL_6025) - 6843718..6844644 (+) 927 WP_170866332.1 ABC transporter six-transmembrane domain-containing protein -
  PFL_RS30550 (PFL_6026) - 6844648..6845616 (-) 969 WP_011064197.1 phosphatidylinositol-specific phospholipase C domain-containing protein -
  PFL_RS33810 - 6845736..6846596 (-) 861 WP_370059457.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53102.08 Da        Isoelectric Point: 8.0997

>NTDB_id=22315 PFL_RS30530 WP_011064193.1 6840201..6841694(+) (comM) [Pseudomonas protegens Pf-5]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNIECLGELALSGAVRPVRGVLPAALAARDAGHTLLVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHAPIAPYVSDGLVQSHFPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVASHKPLRYWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPEPQP
GNDSAAAATRVAGARELQRERQGCANAFLDLPGLRRHCKLSTTDERWLEAACERLGLSLRAAHRLLKVARTLADLEQAAR
ISREHLAEALHYRPSAD

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=22315 PFL_RS30530 WP_011064193.1 6840201..6841694(+) (comM) [Pseudomonas protegens Pf-5]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAGGTCGGCGTCCAGGCTCCGGCTGTCAGTGTTGAAGTGCACCTGGCCAA
CGGCTTGCCGAGCCTGACCCTGGTGGGCCTGCCGGAAGCCGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGTGCAATCC
TCAATGCCGGGTTCAACTTTCCGGCCCGGCGCATTACCCTCAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGATCTGGCCATCGCCCTGGGCATCCTTGCCGCCAGCGTGCAGGTGCCGGCCCTGGCCCTGGACAACATCGAATGCCT
GGGGGAGCTGGCGCTCTCCGGCGCGGTGCGCCCGGTACGCGGCGTACTGCCCGCCGCACTGGCGGCACGCGACGCCGGGC
ATACCCTGCTGGTGCCCCGGGCCAATGCCGAAGAAGCCTGCCTGGCCAGCGGCCTAAAGGTGATCGCGGTGGATCATCTG
CTGGAGGCCGTTGCCCATTTCAACGGCCACGCGCCGATTGCGCCCTATGTCAGCGACGGCCTGGTGCAGAGCCACTTCCC
CTACCCCGACCTCAGCGAAGTGCAAGGCCAGCTCGCCGCCAAGCGCGCCCTGCTGATCGCCGCCGCGGGCGCCCACAACC
TGTTGTTCAGCGGCCCGCCAGGCACCGGCAAGACGCTGTTGGCCAGCCGCTTGCCCGGCCTGCTGCCACCGTTGCAGGAA
GATGAAGCCCTGGAAGTCGCGGCGATCCAGTCGGTGGCCAGCCACAAGCCCCTGCGCTACTGGCCACAGCGGCCGTTTCG
CCAGCCCCACCATTCGGCTTCGGGTGCGGCACTGGTCGGAGGCGGCTCGAAACCCCAGCCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTGCTGCGCGAGCCCATGGAGTCC
GGGCAGATCGTCATTGCCCGAGCCCGGGACCGGGTGCAGTTCCCGGCACGCTTCCAATTGGTGGCAGCGATGAACCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGACGCTGCCGTTGCACACCGGAGCAGATCCAGCGCTATCGCAACAAGTTAT
CCGGGCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCGCCCTCAACCCCGAGCCGCAACCG
GGCAATGACAGCGCCGCAGCCGCCACCAGGGTCGCCGGGGCTCGCGAGCTGCAACGCGAGCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGTCGCCACTGCAAATTATCCACAACCGACGAGCGCTGGCTGGAAGCGGCCTGCGAAC
GCCTGGGCCTGTCGTTGCGGGCCGCTCACCGTTTGCTCAAGGTGGCGCGTACCCTGGCGGACCTGGAACAGGCCGCGCGA
ATCAGCCGCGAGCACCTGGCCGAAGCCCTGCATTACCGGCCCAGCGCCGATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EVM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Glaesserella parasuis strain SC1401

54.8

100

0.551
  comM Haemophilus influenzae Rd KW20

54.491

100

0.549
  comM Legionella pneumophila str. Paris

50.198

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459

Multiple sequence alignment