Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   A6J85_RS00735 Genome accession   NZ_CP020450
Coordinates   130162..130827 (-) Length   221 a.a.
NCBI ID   WP_061596056.1    Uniprot ID   A0AB35FRH9
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125162..135827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS00730 (A6J85_00725) hpf 129535..130077 (-) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A6J85_RS00735 (A6J85_00730) comFC/cflB 130162..130827 (-) 666 WP_061596056.1 ComF family protein Machinery gene
  A6J85_RS00740 (A6J85_00735) comFA/cflA 130824..132125 (-) 1302 WP_082307130.1 DEAD/DEAH box helicase Machinery gene
  A6J85_RS00745 (A6J85_00740) - 132181..132813 (+) 633 WP_045772978.1 YigZ family protein -
  A6J85_RS00750 (A6J85_00745) cysK 132911..133840 (+) 930 WP_061599612.1 cysteine synthase A -
  A6J85_RS00755 (A6J85_00750) - 133874..134260 (-) 387 WP_012000099.1 S1 RNA-binding domain-containing protein -
  A6J85_RS00760 (A6J85_00755) - 134257..135660 (-) 1404 WP_082307131.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25827.93 Da        Isoelectric Point: 8.2663

>NTDB_id=223147 A6J85_RS00735 WP_061596056.1 130162..130827(-) (comFC/cflB) [Streptococcus gordonii strain FDAARGOS_257]
MKQCLICLAILEEQLNFMDLLLLKRKENDICQECLNSFEEIPEEHCPTCYKAGDKKLCKDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSLRKELKNFQSYTILSIPLSESKMKTRGFNQVSGLLEAAQIPYQELLKKKESQTQS
SKDRKERLENTGNFYMIENTKIPKKILLVDDIYTTGATLQDAKMALFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=223147 A6J85_RS00735 WP_061596056.1 130162..130827(-) (comFC/cflB) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAACAATGTCTAATCTGCTTAGCTATATTAGAAGAGCAGTTGAATTTTATGGATTTATTACTATTAAAAAGAAAAGA
AAATGACATTTGTCAAGAGTGCTTAAATTCCTTCGAAGAAATTCCAGAAGAACATTGTCCAACCTGTTATAAAGCTGGGG
ACAAAAAATTGTGCAAAGATTGTCAATACTGGCAGGAAAGAGGATTAGAAGTAGCACACAAAAGTTTGTACACTTATAAT
AAAGCAATGAAAGACTATTTTAGTCGCTACAAATTTCAAGGAGATTATCTTTTAAGAAATGTATTTGCCTTAAGCCTAAG
AAAAGAGTTAAAAAATTTTCAAAGCTACACAATTTTAAGCATTCCTTTAAGTGAAAGTAAGATGAAAACGAGAGGATTCA
ATCAAGTGTCTGGATTGCTTGAAGCTGCACAGATACCTTACCAAGAACTATTAAAGAAAAAAGAAAGCCAGACTCAGTCA
AGTAAAGACAGAAAAGAGAGATTAGAAAACACAGGTAACTTTTACATGATTGAAAATACGAAAATCCCGAAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGTGCAACTTTACAGGATGCAAAAATGGCATTATTTGAAAACGGAGCGAAAGAAA
TCATGACATTTTCACTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

50.228

99.095

0.498
  comFC/cflB Streptococcus pneumoniae Rx1

49.772

99.095

0.493
  comFC/cflB Streptococcus pneumoniae D39

49.772

99.095

0.493
  comFC/cflB Streptococcus pneumoniae R6

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis NCTC 12261

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis SK321

49.315

99.095

0.489

Multiple sequence alignment