Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   A6J82_RS00855 Genome accession   NZ_CP020449
Coordinates   143069..144112 (-) Length   347 a.a.
NCBI ID   WP_223297804.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138069..149112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS00820 (A6J82_00830) - 138655..139320 (-) 666 WP_000008108.1 CPBP family intramembrane glutamic endopeptidase -
  A6J82_RS00825 (A6J82_00835) - 139389..139655 (-) 267 Protein_137 hypothetical protein -
  A6J82_RS00830 (A6J82_00840) - 139634..139826 (-) 193 Protein_138 helix-turn-helix transcriptional regulator -
  A6J82_RS00835 (A6J82_00845) - 139954..141147 (-) 1194 WP_000047534.1 acetate kinase -
  A6J82_RS00840 (A6J82_00850) comYH 141179..142153 (-) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  A6J82_RS00845 (A6J82_00855) comGG 142268..142639 (-) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG -
  A6J82_RS00850 (A6J82_00860) comGF 142617..143072 (-) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF -
  A6J82_RS00855 (A6J82_00865) comYB 143069..144112 (-) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  A6J82_RS00860 (A6J82_00870) comYA 144006..144977 (-) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  A6J82_RS00865 (A6J82_00880) - 145142..146554 (+) 1413 WP_017771557.1 IS1182 family transposase -
  A6J82_RS00870 (A6J82_00885) ltrA 146604..147881 (-) 1278 WP_001292556.1 group II intron reverse transcriptase/maturase -
  A6J82_RS00875 (A6J82_00890) - 148572..148937 (-) 366 WP_000285374.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 40014.77 Da        Isoelectric Point: 9.9642

>NTDB_id=223095 A6J82_RS00855 WP_223297804.1 143069..144112(-) (comYB) [Streptococcus agalactiae strain FDAARGOS_254]
MDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDCYTDRMNKALLEGKDLSKML
GELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVATYPLILLSFLVLIMIGLRHYLMPQLGENNFATR
LITNVPNIFLLLLAVVLIFSLIFYIIQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQN
QKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVI
FIFVALIIVMIYAAMLLPMYQNMEILS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=223095 A6J82_RS00855 WP_223297804.1 143069..144112(-) (comYB) [Streptococcus agalactiae strain FDAARGOS_254]
ATAGACAAGTGGATATCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAA
ACAACGGAAAGTAGTCCAACTTTTTAATAATCTTTTTGCTAGTGGTTTTTCTTTAACTGATATGGTCACCTTCTTAAAGA
GGAGTAAGTTATTGTCTGATTGTTATACAGATAGGATGAATAAGGCATTATTAGAGGGAAAAGATTTATCAAAAATGTTA
GGAGAGTTAGGTTTTTCTGACACTGTTATCACACAGGTTGCATTAGCTGATTTGCATGGTAACATTTCAAGGAGCCTACT
AAAGATTGAGTCTTATTTAGCTAATCTTTTGTTAGTTAGAAAAAAAGTAATAGAAGTAGCTACTTACCCATTGATATTAT
TGTCTTTTCTGGTGCTAATTATGATTGGCCTTAGGCATTATTTAATGCCCCAATTAGGAGAAAATAATTTTGCAACTAGA
CTGATTACAAATGTGCCGAATATTTTCTTATTACTTTTAGCAGTTGTACTTATTTTTAGTTTAATATTTTATATTATTCA
AAAGCGATTGTCGCGCATTAAAGTAGCTTGTTTTTTAACAACAATTCCCTTAGTTGGATCATATGTTAAGCTTTATTTAA
CTGCTTACTATGCCCGTGAGTGGGGAAATTTATTAAGTCAAGGTGTTGAATTGGACCAAATTGTTAAAGTAATGCAAAAT
CAGAAATCCAAACTTTTTAGGGAAATAGGATATGACATGGAAGAAGGTTTTCTATCAGGTAAAGCATTTCACCAAAAAGT
ATTAGACTATCCGTTTTTCTTAACTGAGCTTAGTTTAATGATTGAATATGGTCAAGTTAAGGCGAAATTAGGAACAGAGT
TAGATATATATGCTGATGAGAAGTGGGAGGATTTTTTTACAAAATTAGCTAGAGCGACCCAGTTAATCCAACCTGTTATT
TTTATTTTTGTAGCTCTTATCATTGTTATGATTTATGCAGCAATGCTGTTACCAATGTATCAAAATATGGAGATATTATC
ATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

62.17

98.271

0.611
  comYB Streptococcus mutans UA159

61.877

98.271

0.608
  comYB Streptococcus gordonii str. Challis substr. CH1

56.012

98.271

0.55
  comGB/cglB Streptococcus mitis NCTC 12261

54.925

96.542

0.53
  comGB/cglB Streptococcus mitis SK321

54.328

96.542

0.524
  comGB/cglB Streptococcus pneumoniae Rx1

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae D39

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae R6

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae TIGR4

53.433

96.542

0.516
  comGB Lactococcus lactis subsp. cremoris KW2

50.148

97.118

0.487

Multiple sequence alignment