Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A6J72_RS05405 Genome accession   NZ_CP020433
Coordinates   1088551..1089318 (-) Length   255 a.a.
NCBI ID   WP_009569741.1    Uniprot ID   A0AAE8G2D6
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083551..1094318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS05380 (A6J72_05395) ychF 1083709..1084824 (-) 1116 WP_082311946.1 redox-regulated ATPase YchF -
  A6J72_RS05385 (A6J72_05400) - 1084970..1085470 (+) 501 WP_082311947.1 DUF1307 domain-containing protein -
  A6J72_RS05390 (A6J72_05405) - 1085493..1085690 (-) 198 WP_003075608.1 DUF951 domain-containing protein -
  A6J72_RS05395 (A6J72_05410) dnaN 1085690..1086826 (-) 1137 WP_003075500.1 DNA polymerase III subunit beta -
  A6J72_RS05400 (A6J72_05415) dnaA 1086982..1088325 (-) 1344 WP_009569743.1 chromosomal replication initiator protein DnaA -
  A6J72_RS05405 (A6J72_05420) spo0J 1088551..1089318 (-) 768 WP_009569741.1 ParB/RepB/Spo0J family partition protein Regulator
  A6J72_RS05410 (A6J72_05425) htrA 1089373..1090563 (-) 1191 WP_009569739.1 S1C family serine protease Regulator
  A6J72_RS05415 (A6J72_05430) rlmH 1090767..1091246 (+) 480 WP_082311948.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  A6J72_RS05425 (A6J72_05440) - 1091523..1091669 (+) 147 WP_003075491.1 bacteriocin -
  A6J72_RS05430 (A6J72_05445) comD/comD1 1091686..1093011 (+) 1326 WP_216641942.1 GHKL domain-containing protein Regulator
  A6J72_RS05435 (A6J72_05450) comE 1093011..1093760 (+) 750 WP_003075488.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29686.07 Da        Isoelectric Point: 9.1122

>NTDB_id=223001 A6J72_RS05405 WP_009569741.1 1088551..1089318(-) (spo0J) [Streptococcus intermedius strain FDAARGOS_233]
MEKYQYITLNDIQTNPYQPRKEFSEDKITELANSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
LTDDEMIKQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIALTIGKSRPYITNSVRLLNLPSNIIEAVKEGNISQGHA
RLLINLSEKEQNHWFEKILSQELSVRKLEKQLHPKRTKTITKDKNQLFIKEEEERLKRIFGTDISLRFSKQSQSGKICIH
FSNQEEYQRIIDSFT

Nucleotide


Download         Length: 768 bp        

>NTDB_id=223001 A6J72_RS05405 WP_009569741.1 1088551..1089318(-) (spo0J) [Streptococcus intermedius strain FDAARGOS_233]
ATGGAAAAATATCAATACATTACACTTAATGACATACAAACCAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGACAA
AATTACTGAACTTGCTAATTCTATAAAAGAACATGGAATTATTCAGCCCATCATTGTACGAAAATCTCCAATAATTGGTT
ATGAATTACTAGCTGGTGAAAGACGTTTTAGAGCTGCTAAATTAGCAGGTTTAACTAATATACCAGCTATTATAAAAGAA
TTAACAGATGATGAAATGATAAAGCAAGCTATCATTGAAAATTTACAAAGAGAAGACCTCAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTAATTGACAAGGGATTGACACACAAAGAAATCGCTCTAACAATAGGAAAATCTCGCCCTTACATTA
CAAATTCTGTTCGTTTATTAAATTTACCATCCAATATAATTGAAGCAGTAAAAGAAGGAAATATCTCTCAAGGACATGCT
CGCCTACTTATCAATCTCTCAGAAAAAGAGCAAAATCACTGGTTTGAAAAAATTCTATCTCAAGAACTTTCAGTTAGAAA
ACTAGAAAAACAATTGCACCCAAAACGAACAAAAACTATAACAAAAGATAAAAATCAACTTTTTATCAAAGAAGAAGAAG
AAAGGTTAAAAAGGATATTTGGTACAGATATTTCACTCCGATTTTCCAAGCAGTCTCAATCTGGAAAAATCTGTATTCAC
TTTTCAAATCAAGAAGAATATCAAAGAATTATTGACAGCTTTACATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-190)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.938

100

0.525

Multiple sequence alignment