Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PFL_RS06240 | Genome accession | NC_004129 |
| Coordinates | 1403845..1404897 (+) | Length | 350 a.a. |
| NCBI ID | WP_011059579.1 | Uniprot ID | A0A2C9EHI1 |
| Organism | Pseudomonas protegens Pf-5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1374160..1404897 | 1403845..1404897 | within | 0 |
Gene organization within MGE regions
Location: 1374160..1404897
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFL_RS06075 (PFL_1199) | - | 1374160..1375059 (-) | 900 | WP_011059546.1 | LysR substrate-binding domain-containing protein | - |
| PFL_RS06080 (PFL_1200) | - | 1375164..1376276 (+) | 1113 | WP_011059547.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| PFL_RS06085 (PFL_1201) | fghA | 1376363..1377208 (+) | 846 | WP_011059548.1 | S-formylglutathione hydrolase | - |
| PFL_RS06090 (PFL_1202) | ispF | 1377261..1377734 (+) | 474 | WP_011059549.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| PFL_RS06095 (PFL_1203) | truD | 1377731..1378789 (+) | 1059 | WP_011059550.1 | tRNA pseudouridine(13) synthase TruD | - |
| PFL_RS06100 (PFL_1204) | surE | 1378777..1379526 (+) | 750 | WP_011059551.1 | 5'/3'-nucleotidase SurE | - |
| PFL_RS06105 (PFL_1205) | - | 1379568..1380203 (+) | 636 | WP_169892832.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| PFL_RS31795 (PFL_1206) | - | 1380416..1381276 (+) | 861 | WP_011059553.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PFL_RS06115 (PFL_1207) | rpoS | 1381383..1382390 (+) | 1008 | WP_011059554.1 | RNA polymerase sigma factor RpoS | - |
| PFL_RS06120 (PFL_1208) | fdxA | 1382903..1383226 (-) | 324 | WP_011059555.1 | ferredoxin FdxA | - |
| PFL_RS06125 (PFL_1209) | mutS | 1383370..1385949 (-) | 2580 | WP_011059556.1 | DNA mismatch repair protein MutS | - |
| PFL_RS06130 (PFL_1210) | - | 1386136..1386882 (+) | 747 | WP_041774082.1 | LexA family transcriptional regulator | - |
| PFL_RS06135 (PFL_1211) | - | 1387400..1387750 (+) | 351 | WP_011059558.1 | phage holin family protein | - |
| PFL_RS06140 (PFL_1212) | - | 1387849..1388166 (+) | 318 | Protein_1225 | late control protein | - |
| PFL_RS06145 (PFL_1213) | - | 1388216..1389352 (+) | 1137 | WP_011059560.1 | glycosyl hydrolase family 18 protein | - |
| PFL_RS06150 (PFL_1214) | - | 1389510..1390091 (+) | 582 | WP_011059561.1 | phage tail terminator protein | - |
| PFL_RS06155 (PFL_1215) | - | 1390088..1390270 (+) | 183 | WP_011059562.1 | DUF2635 domain-containing protein | - |
| PFL_RS06160 (PFL_1216) | - | 1390270..1391766 (+) | 1497 | WP_011059563.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PFL_RS06165 (PFL_1217) | - | 1391833..1392180 (+) | 348 | WP_011059564.1 | phage tail tube protein | - |
| PFL_RS06170 (PFL_1218) | - | 1392177..1392473 (+) | 297 | WP_011059565.1 | phage tail assembly protein | - |
| PFL_RS06175 (PFL_1219) | - | 1392604..1394202 (+) | 1599 | WP_011059566.1 | tail protein | - |
| PFL_RS06180 (PFL_1220) | - | 1394192..1395436 (+) | 1245 | WP_011059567.1 | DNA circularization protein | - |
| PFL_RS06185 (PFL_1221) | - | 1395440..1396480 (+) | 1041 | WP_011059568.1 | phage baseplate assembly protein | - |
| PFL_RS06190 (PFL_1222) | - | 1396590..1397096 (+) | 507 | WP_011059569.1 | phage baseplate assembly protein V | - |
| PFL_RS06195 (PFL_1223) | - | 1397099..1397497 (+) | 399 | WP_011059570.1 | phage GP46 family protein | - |
| PFL_RS06200 (PFL_1224) | - | 1397487..1398527 (+) | 1041 | WP_011059571.1 | baseplate J/gp47 family protein | - |
| PFL_RS06205 (PFL_1225) | - | 1398515..1399114 (+) | 600 | WP_011059572.1 | YmfQ family protein | - |
| PFL_RS06210 (PFL_1226) | - | 1399130..1399940 (+) | 811 | Protein_1239 | phage tail protein | - |
| PFL_RS31800 (PFL_6268) | - | 1400236..1400613 (+) | 378 | WP_011059574.1 | phage tail assembly chaperone | - |
| PFL_RS06220 (PFL_1227) | - | 1400664..1401227 (+) | 564 | WP_011059575.1 | glycoside hydrolase family 19 protein | - |
| PFL_RS06225 (PFL_1228) | - | 1401335..1401850 (+) | 516 | WP_011059576.1 | hypothetical protein | - |
| PFL_RS31805 | - | 1401924..1402109 (+) | 186 | WP_080512171.1 | Com family DNA-binding transcriptional regulator | - |
| PFL_RS06230 (PFL_1229) | - | 1402118..1402960 (+) | 843 | WP_011059577.1 | putidacin L1 family lectin-like bacteriocin | - |
| PFL_RS06235 (PFL_1230) | - | 1403261..1403761 (+) | 501 | WP_011059578.1 | CinA family protein | - |
| PFL_RS06240 (PFL_1231) | recA | 1403845..1404897 (+) | 1053 | WP_011059579.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37462.95 Da Isoelectric Point: 5.5108
>NTDB_id=22297 PFL_RS06240 WP_011059579.1 1403845..1404897(+) (recA) [Pseudomonas protegens Pf-5]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=22297 PFL_RS06240 WP_011059579.1 1403845..1404897(+) (recA) [Pseudomonas protegens Pf-5]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCCACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGTGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAAATCATCGATCTGGGCGTGCTGCACGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCCACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGTGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAAATCATCGATCTGGGCGTGCTGCACGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.