Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   A6J31_RS09775 Genome accession   NZ_CP020431
Coordinates   1892531..1893670 (+) Length   379 a.a.
NCBI ID   WP_002886327.1    Uniprot ID   A0AB33ZAI2
Organism   Streptococcus sp. FDAARGOS_192     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1887531..1898670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS09755 (A6J31_09695) - 1889598..1889819 (+) 222 WP_080611067.1 hypothetical protein -
  A6J31_RS09760 (A6J31_09700) ruvA 1889977..1890567 (+) 591 WP_004181981.1 Holliday junction branch migration protein RuvA -
  A6J31_RS09765 (A6J31_09705) - 1890576..1891130 (+) 555 WP_080611069.1 DNA-3-methyladenine glycosylase I -
  A6J31_RS09770 (A6J31_09710) cinA 1891227..1892495 (+) 1269 WP_080611071.1 competence/damage-inducible protein A Machinery gene
  A6J31_RS09775 (A6J31_09715) recA 1892531..1893670 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  A6J31_RS09780 (A6J31_09720) spx 1893837..1894235 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 40951.51 Da        Isoelectric Point: 4.7970

>NTDB_id=222905 A6J31_RS09775 WP_002886327.1 1892531..1893670(+) (recA) [Streptococcus sp. FDAARGOS_192]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDIVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=222905 A6J31_RS09775 WP_002886327.1 1892531..1893670(+) (recA) [Streptococcus sp. FDAARGOS_192]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGACGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGTCTTGGTGAGCGTGCAGAGCAGAAAGTTCAAGTTATGA
GTTCAGGCTCGCTGGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTAGCCCTCCATGCTGTTGCTCAGACACAAAAAGAAGGCGGAATTGCTGCCTTTATCGA
TGCAGAGCATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTAAATATCGATGAACTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTAGAAATTGCTGGTAAGCTGATTGACTCAGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCCTTGGTACCTCGTGCAGAAATTGATGGAGATATTGGTGATAGCCATGTCGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTTTCTGCTTCTATCAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGTGGACGTGCTCTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATTAAGGTTGTCAAAAACAA
GGTTGCTCCACCATTTAAAGAAGCCTTTGTTGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGACTTAGGTATTATTCAAAAAGCTGGAGCCTGGTTCTCATACAATGGAGAGAAGATTGGTCAAGGATCTGAA
AATGCGAAAAAATATTTGGCAGATCATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATATTGTTGAAGAAGCACAAGTTGAAGAAACATCTGATGAACTTGTTTTAGACCTAGATTCAA
CCATTGAAATTGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902

  recA Streptococcus pyogenes NZ131

89.974

100

0.9

  recA Streptococcus mitis NCTC 12261

86.423

100

0.873

  recA Streptococcus mitis SK321

86.352

100

0.868

  recA Streptococcus pneumoniae Rx1

85.195

100

0.865

  recA Streptococcus pneumoniae D39

85.195

100

0.865

  recA Streptococcus pneumoniae R6

85.195

100

0.865

  recA Streptococcus pneumoniae TIGR4

85.195

100

0.865

  recA Lactococcus lactis subsp. cremoris KW2

78

92.348

0.72

  recA Latilactobacillus sakei subsp. sakei 23K

69.231

89.182

0.617

  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594

  recA Glaesserella parasuis strain SC1401

56.216

97.625

0.549

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541

  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536

  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533

  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53

  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53

  recA Neisseria gonorrhoeae strain FA1090

60.725

87.335

0.53

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53

  recA Vibrio cholerae strain A1552

58.944

89.974

0.53

  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.944

89.974

0.53

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515

  recA Helicobacter pylori strain NCTC11637

56.305

89.974

0.507

  recA Helicobacter pylori 26695

56.305

89.974

0.507

  recA Ralstonia pseudosolanacearum GMI1000

57.576

87.071

0.501

  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499


Multiple sequence alignment