Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   A6J49_RS12765 Genome accession   NZ_CP020421
Coordinates   2167881..2169074 (-) Length   397 a.a.
NCBI ID   WP_002224767.1    Uniprot ID   Q9K1K1
Organism   Neisseria meningitidis strain FDAARGOS_210     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2162881..2174074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J49_RS12740 (A6J49_12290) - 2163181..2163558 (-) 378 WP_002233408.1 helix-turn-helix transcriptional regulator -
  A6J49_RS12745 (A6J49_12295) - 2163677..2164228 (+) 552 WP_002215355.1 hypothetical protein -
  A6J49_RS12750 (A6J49_12300) - 2164248..2164943 (+) 696 WP_002216227.1 hypothetical protein -
  A6J49_RS12755 (A6J49_12305) topA 2165016..2167322 (-) 2307 WP_002224768.1 type I DNA topoisomerase -
  A6J49_RS12760 (A6J49_12310) - 2167394..2167855 (-) 462 WP_002215351.1 DUF494 domain-containing protein -
  A6J49_RS12765 (A6J49_12315) dprA 2167881..2169074 (-) 1194 WP_002224767.1 DNA-processing protein DprA Machinery gene
  A6J49_RS12770 (A6J49_12320) - 2169165..2170442 (-) 1278 WP_002224766.1 sigma-54 dependent transcriptional regulator -
  A6J49_RS12775 (A6J49_12325) - 2170435..2172555 (-) 2121 WP_002224765.1 PAS domain-containing sensor histidine kinase -
  A6J49_RS12780 (A6J49_12330) - 2172555..2173151 (-) 597 WP_002224764.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 397 a.a.        Molecular weight: 42650.06 Da        Isoelectric Point: 6.6117

>NTDB_id=222686 A6J49_RS12765 WP_002224767.1 2167881..2169074(-) (dprA) [Neisseria meningitidis strain FDAARGOS_210]
MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSAPAEQVAALIRHKQALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVQLLHKPSAAIVGSRHATPQAMRIAKDFGKSLGGKGIPVVSGMASGIDT
AAHQGALQAEGGTIAVWGTGIDRIYPPVNKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITARLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILNECPGLLQNTGASSYSINKGIPEKRITAVQT
ASDQLSLPEGKMPSEKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=222686 A6J49_RS12765 WP_002224767.1 2167881..2169074(-) (dprA) [Neisseria meningitidis strain FDAARGOS_210]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCCGTTTCGGCAGCGCGCAAAATGCCCTGTCCGCACCGGCGGAACAGGTGGCGGCACTGATACGGCACAAACAGGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTCTGGCGCGGCAGGCGGCAGAAGCGGCATTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTTCCCGAAATGCTGACGCAGGGGCTGACCGCGCCACCGGTTTTGTT
TTTGCGCGGCAACGTGCAACTGCTGCACAAACCTTCCGCCGCCATCGTCGGCAGCCGTCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAAGTCGTTGGGTGGGAAAGGCATTCCCGTTGTGTCGGGTATGGCTTCGGGCATCGATACC
GCCGCCCATCAGGGTGCGTTGCAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGTCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGATTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAATTTTCCGCGCCGCAACCGCCTGATTGCCGCCCTGTCGCAAGTAACGCTGGTGGTTGAAGCCGCGTTGGAATCC
GGTTCGCTGATTACTGCCAGATTGGCGGCGGAGATGGGGCGCGAAGTGATGGCGGTACCCGGCTCGATAGACAATCCACA
CAGTAAAGGCTGCCACAAACTGATTAAAGACGGCGCAAAATTGGTGGAATGCCTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGGAATACCTGAAAAGCGCATCACTGCCGTTCAGACG
GCATCCGACCAGCTGTCTCTGCCTGAAGGCAAAATGCCGTCTGAAAAGACGGAGAACCGACCCGTCGGCGGCAGTATCTT
GGACAGGATGGGTTTCGACCCAGTTCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCG
CACTGTTGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q9K1K1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

100

100

1

  dprA Neisseria meningitidis MC58

100

100

1

  dprA Neisseria gonorrhoeae strain FA1090

90.176

100

0.902

  dprA Neisseria gonorrhoeae MS11

89.924

100

0.899

  dprA Vibrio cholerae strain A1552

38.346

100

0.385

  dprA Vibrio campbellii strain DS40M4

36.99

98.741

0.365


Multiple sequence alignment