Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J49_RS00040 Genome accession   NZ_CP020421
Coordinates   3099..3614 (+) Length   171 a.a.
NCBI ID   WP_105165248.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J49_RS00015 (A6J49_00015) - 533..922 (+) 390 Protein_1 pilin -
  A6J49_RS00025 (A6J49_00020) - 1187..1573 (+) 387 Protein_2 pilin -
  A6J49_RS00030 (A6J49_00025) - 1898..2323 (+) 426 Protein_3 pilin -
  A6J49_RS00040 (A6J49_00035) pilE 3099..3614 (+) 516 WP_105165248.1 fimbrial major subunit PilE Machinery gene
  A6J49_RS00050 (A6J49_12915) - 4232..4705 (-) 474 WP_146107431.1 hypothetical protein -
  A6J49_RS00055 (A6J49_00040) lpxC 4697..5620 (+) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  A6J49_RS14120 (A6J49_00050) - 6212..6430 (-) 219 WP_061730199.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18158.65 Da        Isoelectric Point: 9.6001

>NTDB_id=222648 A6J49_RS00040 WP_105165248.1 3099..3614(+) (pilE) [Neisseria meningitidis strain FDAARGOS_210]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGNNTSAGVATSSEIK
GKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRADKAKAANDDVTAAAAANGKKIDTKHL
PSTCRDDSSAS

Nucleotide


Download         Length: 516 bp        

>NTDB_id=222648 A6J49_RS00040 WP_105165248.1 3099..3614(+) (pilE) [Neisseria meningitidis strain FDAARGOS_210]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATTCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCCGGCAACAACACTTCTGCCGGCGTGGCAACCTCCTCTGAAATCAAA
GGCAAATATGTTAAAAGCGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGGCTTCAAGCAACGTAAACAACGAAAT
CAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CCGACAAAGCCAAAGCCGCCAACGACGACGTTACCGCCGCCGCCGCCGCCAACGGTAAGAAGATTGACACCAAGCACCTG
CCGTCAACCTGCCGCGATGATTCATCTGCCAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

82.941

99.415

0.825
  pilE Neisseria gonorrhoeae strain FA1090

81.287

100

0.813
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.233

100

0.398
  comP Acinetobacter baylyi ADP1

37.647

99.415

0.374
  pilA/pilA1 Eikenella corrodens VA1

35.593

100

0.368

Multiple sequence alignment