Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A6J48_RS09950 Genome accession   NZ_CP020420
Coordinates   1680755..1682251 (+) Length   498 a.a.
NCBI ID   WP_002245890.1    Uniprot ID   A0AB36RVT9
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1675755..1687251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS13785 - 1678155..1678322 (+) 168 WP_009346312.1 hypothetical protein -
  A6J48_RS09935 (A6J48_09790) putP 1678412..1679938 (-) 1527 WP_002236704.1 sodium/proline symporter PutP -
  A6J48_RS09945 (A6J48_09800) - 1680421..1680741 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  A6J48_RS09950 (A6J48_09805) comM 1680755..1682251 (+) 1497 WP_002245890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A6J48_RS09955 (A6J48_09810) ftsN 1682357..1683220 (+) 864 WP_002234558.1 cell division protein FtsN -
  A6J48_RS09960 (A6J48_09815) dsbA1 1683223..1683867 (+) 645 WP_002212479.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6J48_RS09965 (A6J48_09820) - 1683900..1684721 (+) 822 WP_002239524.1 undecaprenyl-diphosphate phosphatase -
  A6J48_RS09980 (A6J48_09840) - 1685294..1686505 (-) 1212 WP_105182961.1 class I SAM-dependent methyltransferase -
  A6J48_RS09985 (A6J48_09845) mraZ 1686784..1687239 (+) 456 WP_002249263.1 division/cell wall cluster transcriptional repressor MraZ -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53551.60 Da        Isoelectric Point: 6.9339

>NTDB_id=222636 A6J48_RS09950 WP_002245890.1 1680755..1682251(+) (comM) [Neisseria meningitidis strain FDAARGOS_209]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSHRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=222636 A6J48_RS09950 WP_002245890.1 1680755..1682251(+) (comM) [Neisseria meningitidis strain FDAARGOS_209]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTAAAGGAAAGCCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATTACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTTTGAACA
TGGCGGACAACCTGATTTGTGCGATGTGAAAGGTCAGCACACCGCGCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCCACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGTGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCACCACGGCGTATTGTTTTTGGACGAGCTGCCCGAGTTCGACCGCAAAGTTTTAGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCGGCGAAATTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACACCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGTTGCTTGACCGCATCGATTTGACCATCGAAGTCCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCTAGAGACAAACAATACGCACGGCAAGGCAAAGT
GAATGCCGCCTTGAGTGTCAGTGAACTCGACACATCCGCCCGCATTCAAAAAGAAGCGCAGGAAGCATTGGGCGGCCTGC
TGGAAAAACTCTCCCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGTCGCGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.4

100

0.526
  comM Haemophilus influenzae Rd KW20

50

100

0.504
  comM Glaesserella parasuis strain SC1401

49.008

100

0.496
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.829

100

0.438

Multiple sequence alignment